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One Year of Taxonomic Capacity Building by the Belgian Focal Point to the GTI
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RBINS Staff Publications
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New Holothuria species from Australia (Echinodermata: Holothuriidae), with comments on the origin of deep and cool holothuriids.
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Two aspidochirotid species, new to science, from the continental slope of southern Australia are described: Holothuria (Panningothuria) austrinabassa O’Loughlin sp. nov. and Holothuria (Halodeima) nigralutea O’Loughlin sp. nov. The first represents the southernmost documented holothuriid, and is the sister species of the northernmost holothuriid species Holothuria (Panningothuria) forskali Delle Chiaje. The second is a very recent offshoot of the wide-ranging Indo- west Pacific Holothuria (Halodeima) edulis Lesson. Morphological and molecular genetic differences between these species pairs are detailed. Holothuria (Halodeima) signata Ludwig is raised out of synonymy with H. edulis.A lectotype for Holothuria (Halodeima) signata Ludwig is designated, The status of the subgenera Panningothuria Rowe and Halodeima Pearson is discussed. The occurrence of multiple madreporites in Halodeima is discussed.
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RBINS Staff Publications
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Using Sea cucumbers to illustrate the basics of zoological nomenclature
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RBINS Staff Publications
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no Name, No Game
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RBINS Staff Publications
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Algal Taxonomy: a road to nowhere?
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The widespread view of taxonomy as an essentially retrogressive and outmoded science unable to cope with the current biodiversity crisis stimulated us to analyze the current status of cataloguing global algal diversity. Contrary to this largely pessimistic belief, species description rates of algae through time and trends in the number of active taxonomists, as revealed by the web resource AlgaeBase, show a much more positive picture. More species than ever before are being described by a large community of algal taxonomists. The lack of any decline in the rate at which new species and genera are described, however, is indicative of the large proportion of undiscovered diversity and bears heavily on any prediction of global algal species diversity and the time needed to catalogue it. The saturation of accumulation curves of higher taxa (family, order, and classes) on the other hand suggest that at these taxonomic levels most diversity has been discovered. This reasonably positive picture does not imply that algal taxonomy does not face serious challenges in the near future. The observed levels of cryptic diversity in algae, combined with the shift in methods used to characterize them, have resulted in a rampant uncertainty about the status of many older species. As a consequence, there is a tendency in phycology to move gradually away from traditional names to a more informal system whereby clade-, specimen- or strain-based identifiers are used to communicate biological information. Whether these informal names for species-level clades represent a temporary situation stimulated by the lag between species discovery and formal description, or an incipient alternative or parallel taxonomy, will be largely determined by how well we manage to integrate historical collections into modern taxonomic research. Additionally, there is a pressing need for a consensus about the organizational framework to manage the information about algal species names. An eventual strategy should preferably come out of an international working group that includes the various databases as well as the various phycological societies. In this strategy, phycologists should link up to major international initiatives that are currently being developed, such as the compulsory registration of taxonomic and nomenclatural acts and the introduction of Life Science Identifiers.
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RBINS Staff Publications
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De evolutie van evolutiedenken: van Aristotles tot de moderne synthese
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RBINS Staff Publications
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Historical management of equine resources in France from the Iron Age to the Modern Period
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Alongside horses, donkeys and their first-generation hybrids represent members of the Equidae family known for their social, economic and symbolic importance in protohistoric and historical France. However, their relative importance and their respective roles in different regions and time periods are difficult to assess based on textual, iconographic and archaeological evidence. This is both due to incomplete, partial and scattered historical sources and difficulties to accurately assign fragmentary archaeological remains at the proper taxonomic level. DNA- based methods, however, allow for a robust identification of the taxonomic status of ancient equine osseous material from minimal sequence data. Here, we leveraged shallow ancient DNA sequencing and the dedicated Zonkey computational pipeline to obtain the first baseline distribution for horses, mules and donkeys in France from the Iron Age to the Modern period. Our collection includes a total of 873 ancient specimens spanning 128 ubiquitous and the most dominant species identified, our dataset reveals the importance of mule breeding during Roman times, especially between the 1st and 3rd centuries CE (Common Era), where they represented between 20.0% and 34.2% of equine assemblages. In contrast, donkeys were almost absent from northern France as-semblages during the whole Roman period, but replaced mules in rural and urban commercial and economic centers from the early Middle Ages. Our work also identified donkeys of exceptional size during Late Antiquity, which calls for a deep reassessment of the true morphological space of past equine species. This study confirmed the general preference toward horses throughout all time periods investigated but revealed dynamic manage-ment strategies leveraging the whole breadth of equine resources in various social, geographic and temporal contexts.
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RBINS Staff Publications 2021
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Sphaeroptica: A tool for pseudo-3D visualization and 3D measurements on arthropods
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Natural history collections are invaluable reference collections. Digitizing these collections is a transformative process that improves the accessibility, preservation, and exploitation of specimens and associated data in the long term. Arthropods make up the majority of zoological collections. However, arthropods are small, have detailed color textures and share small, complex and shiny structures, which poses a challenge to conventional digitization methods. Sphaeroptica is a multi-images viewer that uses a sphere of oriented images. It allows the visualization of insects including their tiniest features, the positioning of landmarks, and the extraction of 3D coordinates for measuring linear distances or for use in geometric morphometrics analysis. The quantitative comparisons show that the measures obtained with Sphaeroptica are similar to the measurements derived from 3D μCT models with an average difference inferior to 1\%, while featuring the high resolution of color stacked pictures with all details like setae, chaetae, scales, and other small and/or complex structures. Shaeroptica was developed for the digitization of small arthropods but it can be used with any sphere of aligned images resulting from the digitization of objects or specimens with complex surface and shining, black, or translucent texture which cannot easily be digitized using structured light scanner or Structure-from-Motion (SfM) photogrammetry.
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RBINS Staff Publications 2024 OA
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Observations on the reproductive biology of Laurentophryne parkeri (Laurent, 1950) based on the holotype
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RBINS Staff Publications 2017
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A case of predation by Naja samarensis (Elapidae) on Cyclocorus nuchalis nuchalis (Lamprophiidae) on Mindanao Island, Philippines
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RBINS Staff Publications 2020
