Search publications of the members of the Royal Belgian institute of natural Sciences
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A new species of Elpidium (Crustacea, Ostracoda) from phytothelmata in Argentina: description, habitat and geography.
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A new Four-clawed Gecko from limestone hills in Lopburi Province, central Thailand (Squamata, Gekkonidae: Gehyra)
- We describe Gehyra wongchan sp. nov. from Tham Khao Chan (Khao Chan Cave), Tha Luang District, and Wat Khao Wong, Kok Samrong District, in Lopburi Province, central Thailand. The new species differs from all currently recognized Gehyra by the following combination of morphological characters and dorsal color pattern: maximal known snout–vent length of 52.4 mm, 8–10 supralabials, 76–80 dorsal and 48–50 ventral scale rows around midbody, absence of skin folds on limbs, 17 or 18 preanofemoral pores in males in a continuous series extending to mid-length of femur (pores absent in females), tail not- to moderately widened behind vent in adults, a single row of widened subcaudals, digits and toes unwebbed, 7 or 8 divided subdigital lamellae on 4th toe, and a dorsal pattern with white spots as large or larger than adjacent crescentic black markings on a beige to light-brown background.
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Reappraisal of the extinct seal “Phoca” vitulinoides from the Neogene of the North Sea Basin, with bearing on its geological age, phylogenetic affinities, and locomotion
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A Miocene pygmy right whale fossil from Australia
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First European record of the invasive barnacle Balanus glandula Darwin, 1854.
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Vertebrate predation in the Late Devonian evidenced by bite traces and regurgitations: implications for an early tetrapod freshwater ecosystem
- The terrestrialization process by vertebrates occurred during the Devonian period, with fully land-dwelling tetrapods recorded in the Carboniferous. Thus, the Late Devonian is an important period for deciphering the ecological pressures that applied during the water-to-land transition. Higher predation pressures in the underwater environment have been suggested as an influential biotic evolutionary factor in this key habitat shift. Direct evidence of ancient predation on Palaeozoic vertebrates is seen in the form of rare traces preserved on fossils, and these range from trauma observed on the skeleton (such as attack marks) to ingested food remains (bromalites). The late Famennian freshwater ecosystem of Strud (Belgium) consists of a rich assemblage of many coeval gnathostomes or jawed fishes (placoderms, ‘acanthodians’, actinopterygians, and various sarcopterygian groups including tetrapods). Here we analyse the record of direct evidence for predation in the Strud vertebrate fossil assemblage. We recognize 12 regurgitalites and 13 bite traces, including a rare case of a tooth embedded in its original prey body target. Fossils from regurgitalites were imaged using scanning electron microscopy and chemically analysed to test for their possible ingestion signature by comparison with other isolated skeletal remains from the same locality. From this evidence, tristichopterid tetrapodomorphs are inferred to be the highest consumers of the trophic network, targeting small placoderms, and porolepiforms, and probably congeners. We observe two possible prey patterns in regurgitalites, for sarcopterygians and actinopterygians, both of which are associated with acanthodians. In Strud, no trophic position can be deduced for tetrapods from direct fossil evidence of predation.
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Opportunistic feeding habits of two African freshwater clupeid fishes: DNA metabarcoding unravels spatial differences in diet and microbiome, and identifies new prey taxa
- The African Lake Tanganyika clupeids play an important role in the lake's ecosystem and have a high regional economic and nutritional value. Using DNA metabarcoding, we analysed the prey item composition and microbiome of these two clupeid species, Stolothrissa tanganicae and Limnothrissa miodon. We sequenced the mitochondrial COI region of the gut content for prey analysis and the 16S rRNA region of the hindgut content for microbiome analysis of 140 fish sampled at five locations across Lake Tanganyika. Our research confirmed previously reported prey items and discovered prey items that were not reported before, including the jellyfish Limnocnida tanganjicae. The hindgut of the fish harboured 15 bacterial phyla, with the most common being Firmicutes and Proteobacteria. The two clupeid species differed in diet, but not in microbiome. Further, the diet of S. tanganicae, but not its microbiome, varied on a spatial scale, whereas the microbiome, but not the diet, of L. miodon showed spatial variation. Our findings suggest that the Lake Tanganyika clupeids are opportunists, with a diet reflecting the local zooplankton community's composition. These results can serve as a useful reference for monitoring the health status of economically important fish stocks.
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A 1500-year record of North Atlantic storm flooding from lacustrine sediments, Shetland Islands (UK)
- Severe storm flooding poses a major hazard to the coasts of north-western Europe. However, the long-term recurrence patterns of extreme coastal flooding and their governing factors are poorly understood. Therefore, high-resolution sedimentary records of past North Atlantic storm flooding are required. This multi-proxy study reconstructs storm-induced overwash processes from coastal lake sediments on the Shetland Islands using grain-size and geochemical data, and the re-analysis of historical data. The chronostratigraphy is based on Bayesian age–depth modelling using accelerator mass spectrometry 14C and 137Cs data. A high XRF-based Si/Ti ratio and the unimodal grain-size distribution link the sand layers to the beach and thus storm-induced overwash events. Periods with more frequent storm flooding occurred 980–1050, 1150–1300, 1450–1550, 1820–1900 and 1950–2000 ce, which is largely consistent with a positive North Atlantic Oscillation mode. The Little Ice Age (1400–1850 ce) shows a gap of major sand layers suggesting a southward shift of storm tracks and a seasonal variance with more storm floods in spring and autumn. Warmer phases shifted winter storm tracks towards the north-east Atlantic, indicating a possible trend for future storm-track changes and increased storm flooding in the northern North Sea region.
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No difference between critical and sprint swimming speeds for two galaxiid species
- Researchers have used laboratory experiments to examine how fish might be affected by anthropogenic alterations and conclude how best to adjust fish passage and culvert remediation designs in response. A common way to document swimming performance for this purpose is measuring fish critical swimming speed (Ucrit). Nonetheless, the Ucrit protocol as defined by Brett [(1964) Journal of the Fisheries Research Board of Canada, 21, 1183–1226] may be inappropriate for studying swimming performance and determining how it relates to upstream migration in benthic fish, as they may not actively swim throughout the entire Ucrit test. An alternative method to estimate swimming performance is sprint swimming speed (Usprint), which is suggested to be a measure of the burst speed of fish rather than maximum sustained swimming speed. The authors conducted comparative swimming performance experiments to evaluate whether Usprint can be used to compare swimming performance of benthic species to that of pelagic, actively swimming species. They measured individual swimming speeds of īnanga (Galaxias maculatus), an actively swimming pelagic species, and banded kōkopu (Galaxias fasciatus), a fish that exhibits benthic station-holding behaviour, using both the Usprint and Ucrit test. Experiments revealed that no significant statistical difference between swimming speeds was estimated using the Ucrit and Usprint test protocols for both G. maculatus and G. fasciatus. The result of this study suggests that fish swimming speeds obtained using these two methods are comparable for the species used in this study. By using Usprint for benthic-associated fish and Ucrit for pelagic fish, we may be able to compare a broader range of species' swimming abilities for use in a fish passage context.
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Sedimentary evidence of the Late Holocene tsunami in the Shetland Islands (UK) at Loch Flugarth, northern Mainland
- Tsunami deposits around the North Sea basin are needed to assess the long-term hazard of tsunamis. Here, we present sedimentary evidence of the youngest tsunami on the Shetland Islands from Loch Flugarth, a coastal lake on northern Mainland. Three gravity cores show organic-rich background sedimentation with many sub-centimetre-scale sand layers, reflecting recurring storm overwash and a sediment source limited to the active beach and uppermost subtidal zone. A basal 13-cm-thick sand layer, dated to 426–787 cal. a CE based on 14C, 137Cs and Bayesian age–depth modelling, was found in all cores. High-resolution grain-size analysis identified four normally graded or massive sublayers with inversely graded traction carpets at the base of two sublayers. A thin organic-rich ‘mud’ drape and a ‘mud’ cap cover the two uppermost sublayers, which also contain small rip-up clasts. Grain-size distributions show a difference between the basal sand layer and the coarser and better sorted storm layers above. Multivariate statistical analysis of X-ray fluorescence core scanning data also distinguishes both sand units: Zr, Fe and Ti dominate the thick basal sand, while the thin storm layers are high in K and Si. Enriched Zr and Ti in the basal sand layer, in combination with increased magnetic susceptibility, may be related to higher heavy mineral content reflecting an additional marine sediment source below the storm-wave base that is activated by a tsunami. Based on reinterpretation of chronological data from two different published sites and the chronostratigraphy of the present study, the tsunami seems to date to c. 1400 cal. a BP. Although the source of the tsunami remains unclear, the lack of evidence for this event outside of the Shetland Islands suggests that it had a local source and was smaller than the older Storegga tsunami (8.15 cal. ka BP), which affected most of the North Sea basin.
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Microbiomes of aquatic animals
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Developing eDNA metabarcoding as a tool for zero-impact and internationally coordinated biodiversity monitoring
- Human impacts must be managed to minimize the global-scale degradation of natural ecosystems, but doing so requires biodiversity data to track possible changes. Traditional methods for obtaining such data are often destructive and require species being manually identified in a time-consuming and costly manner. High-throughput sequencing technologies now provide an additional method by metabarcoding environmental DNA (eDNA), which is non-destructive and relatively inexpensive. Studies on eDNA metabarcoding show promising results which quickly led to the technique becoming a hot-topic, but also indicate several obstacles for its large-scale application. The RBINS is involved in ongoing research initiatives in the Belgian part of the North Sea applying eDNA techniques to a wide range of organisms to obtain biodiversity data and improve metabarcoding research. We will describe the Belgian ZERO-IMPACT and the international Science for Good Environmental Status projects and present some preliminary results. Whilst eDNA metabarcoding isn’t expected to replace traditional monitoring methods, we can expect it to soon become essential for nations to monitor their marine impacts, including the Marine Strategy Framework Directive.
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Cryptic Diversity, Phylogeography and Genetic Connectivity of Abyssorchomene distinctus (Pacific Ocean and SE Indian Ridge)
- Polymetallic nodule mining is a growing commercial interest over the past three decades. It is critical to accurately estimate biodiversity before any minerals are exploited in the Clarion-Clipperton Zone (CCZ) in the Northeast Pacific Ocean. Scavenging amphipods are a large group in the abyssal biota and play an important role in the nutrient cycling system. This study uses both mitochondrial (COI) and nuclear (28S rRNA) DNA markers to investigate genetic diversity and connectivity in Abyssorchomene distinctus (Lysianassoidea – Uristidae) (Birstein & Vinogradov, 1960). The genetic sequences of 113 sampled individuals of Abyssorchomene distinctus, which originated from the CCZ, the Discol Experimental Area (DEA), the Atacama Trench and the Southeast Indian Ridge, revealed the absence of cryptic diversity for A. distinctus on a global scale. The findings contrasted with those for other closely related scavenging amphipods, which revealed the presence of cryptic species. Population genetics analyses calculated a low haplotype diversity (Hd) within the A. distinctus population across the Pacific Ocean, while a high Hd was found in the Indian Ocean populations. This is the first study to date providing preliminary indications of a possible genetic connectivity of the scavenging amphipod species Abyssorchomene distinctus between the CCZ and DEA, being geographically separated by a vast distance of 5,000 km. Shared haplotypes were also found between the CCZ, DEA, Atacama Trench and the Southeast Indian Ridge in the COI mitochondrial DNA dataset , which was congruent with results from previous studies on other scavenging amphipods.
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The amazing evolutionary diversity of a taxon: Genome sizes of twenty Antarctic amphipod species
- Polar ecosystems feature among the last pristine areas of planet Earth, but also among the fastest changing due to global change. The long isolation history of the Southern Ocean has led to high levels of endemism, resulting in a hotspot of biodiversity for many taxa, including crustaceans (Malacostraca). Genomes represent the blueprint of this long evolution. Geographic isolation in combination with harsh and challenging sampling conditions, has left considerable biological knowledge gaps in the Southern Ocean. Closing these knowledge gaps is challenging for Antarctic amphipods because their genome sizes are highly variable and they are hard to sample. Genome size of amphipods are widely varying, ranging from 0.68 to 64.62 pg with an average of 12.85 pg (± 4.46 pg). Unfortunately, information on the genome size of amphipods remains limited, especially from polar regions. Just 65 records of amphipod genome sizes are listed in the Animal Genome Size Database, of which 17 marine species. To close the knowledge gap, I used flow cytometry to estimate the genome size of 32 Antarctic amphipod species. I successfully estimated genome sizes for 20 species, ranging from 0.45 pg to 57.28 pg (> 120-fold difference). Preliminary analyses do not show any significant correlation between depth and genome size or body size and genome size. The results provide a valuable addition to the inventory of the genome size of amphipods, especially from extreme environments.
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Automated curve fitting and unsupervised clustering of manganese oxide Raman responses
- Natural manganese oxides characterization represents a challenge due to the broad variety of their structures and geochemical compositions along with a frequent poor crystallinity. This characterization requires the ability to conduct both a phase separation and a phase association operation. In this paper, the Raman spectra acquired on a selection of natural manganese oxide minerals are first processed with an automated curve-fitting model called MnOx. The adjustment of convolution envelope is realized, thanks to the Levenberg–Marquardt algorithm applied on a set of randomly generated seed pseudo-Voigt curves. The application conditions of the automated curve-fitting and, in particular, the number of seed curves are investigated with regards to the risk of overfitting. The MnOx model outputs are in a second step treated by data mining techniques and in particular by unsupervised clustering methods. This data processing shows promising results in terms of phase separation when the number of clusters is equivalent to the number of phases. By contrast, the decrease of number of clusters leads to a phase association which reflects spectral affinities between phases. This result shows the existence of 6 to 7 vibrational bands in Mn oxides Raman spectra, with contrasting behaviours between clustering. Thereby, vibrational bands located in the low wave number domain (<510 cm−1) are more mobile and therefore more sensitive to structural modifications, while bands with higher wave number are less affected by structural changes. Besides these results, Raman responses collected during this study provide new refinement regarding the spectral content of some Mn oxides in particular todorokite, nsutite, and chalcophanite.
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PSI analysis of multi-sensor archive data for urban geohazard risk management: a case-study from Brussels
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Subsidence Related To Groundwater Pumping For Breweries in Belgium
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Assessing Vertical Elevation Changes of Coastal Areas in Southern Chile to Improve The Understanding of Their Paleotsunami Sedimentary Records
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ShimoniIGARSS2017
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MAS DE VIGNOLLES XIV (NIMES, GARD, SOUTHERN FRANCE): DIFFERENT PERSPECTIVES ON LAND USE AND MANAGEMENT FROM THE PROTOHISTORY TO THE MIDDLE AGES
- The enlargement of a commercial centre in the vicinity of Nîmes (Southern France) offered evidence on land occupation and exploitation, from the Iron Age to the Middle Ages. The location of the living and working areas, paths and agrarian ‘structures’ uncovered was conditioned by the problematic topography and environment (humid depression; cyclic flooding) as identified by geomorphology and malacology. The diversity of the plant cover and of land management is also recognized by malacology, which emphasizes the importance of animal husbandry and pasture during the whole sequence, in agreement with data from pollen, beetles and domestic fauna. Concentrations of cattle remains rekindle the idea of a hypothetical link between significant consumption of cattle meat and humid areas. The impact of human activities on the plant cover is recognized in the low frequencies of arboreal pollen recorded since the Iron Age; however, fuelwood was apparently readily available as suggested by charcoal data. Further information on economic activities is provided by archaeobotany. The importance of Cannabis sativa and Linum usitatissimum may explain why this “ecologically problematic” area was exploited. Access to water is essential for the processing of plant fibres. Cereal cultivation, better recognized by palynology than by archaeobotany, appears to suffer fluctuations through time. The remains of Vitis constitute the first material proof of local vine cultivation during the Middle Ages.
