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Article Reference First annotated draft genomes of nonmarine ostracods (Ostracoda, Crustacea) with different reproductive modes
Ostracods are one of the oldest crustacean groups with an excellent fossil record and high importance for phylogenetic analyses but genome resources for this class are still lacking. We have successfully assembled and annotated the first reference genomes for three species of nonmarine ostracods; two with obligate sexual reproduction (Cyprideis torosa and Notodromas monacha) and the putative ancient asexual Darwinula stevensoni. This kind of genomic research has so far been impeded by the small size of most ostracods and the absence of genetic resources such as linkage maps or BAC libraries that were available for other crustaceans. For genome assembly, we used an Illumina-based sequencing technology, resulting in assemblies of similar sizes for the three species (335–382 Mb) and with scaffold numbers and their N50 (19–56 kb) in the same orders of magnitude. Gene annotations were guided by transcriptome data from each species. The three assemblies are relatively complete with BUSCO scores of 92–96. The number of predicted genes (13,771–17,776) is in the same range as Branchiopoda genomes but lower than in most malacostracan genomes. These three reference genomes from nonmarine ostracods provide the urgently needed basis to further develop ostracods as models for evolutionary and ecological research.
Located in Library / RBINS Staff Publications 2021
Article Reference On the first Belgian record of the Eifelian (Middle Devonian) ammonoid cephalopod Subanarcestes (Suborder Anarcestina)
Ammonoid cephalopods are extremely rare in the Lower and Middle Devonian sedimentary rocks of Belgium, which contrasts with the neighboring sedimentary basins. However, searches in old collections and recent collecting efforts show that ammonoids do occur in these beds in Belgium, which allows to enlarge our knowledge of Lower and Middle Devonian ammonoid occurrences. Here, a record of the Eifelian (Middle Devonian) anarcestid ammonoid genus Subanarcestes is described for the first time from Belgium based on a specimen from the Jemelle Formation (Chavées Member). This specimen was collected more than a century ago by Eugène Maillieux at Trou Bodet near Couvin. It laid unrecognized as an ammonoid cephalopod for many decades in the collections of the Royal Belgian Institute of Natural Sciences, while being previously identified as Cryptoceras or ‘Nautilus’ fossil, which if correct, constituted Belgium’s oldest Nautilida fossil. Micro-CT imaging greatly helped in the taxonomic assignment of the specimen.
Located in Library / RBINS Staff Publications 2023
Article Reference A Santonian record of the nautilid cephalopod Angulithes westphalicus (Schlüter, 1872) from the subsurface of the Campine, north-east Belgium, with comments on regional lithostratigraphic problems
Newly recognised material of the Late Cretaceous nautilid Angulithes westphalicus is described from the subsurface of the eastern part of the Campine in north-east Belgium. This constitutes the first formal documentation of this genus and species from the Cretaceous of Belgium, having been identified amongst a large suite of fossils collected from the Voort Shafts I & II of the Zolder colliery during the first half of the twentieth century. The specimens originate from an interval of marine calcareous sand with a marly glauconiferous base, dated as late middle Santonian (Gonioteuthis westfalicagranulata belemnite Zone) and for which a deepening of the depositional environment is documented. Lithostratigraphically, the specimens occur within the Vaals Formation, within the upper part of the Asdonk Member or alternatively within the lower part of the Sonnisheide Member. The early Campanian age of the Asdonk Member suggested previously is refuted, the age of the Sonnisheide Member needs further study. The position of the siphuncle in A. westphalicus is illustrated for the first time; it is positioned closer to the venter than the dorsum, which confirms the close evolutionary relationship with Angulithes galea, which ranges from the upper Turonian to middle Coniacian in central Europe.
Located in Library / RBINS Staff Publications 2023
Article Reference The fossil bivalve Angulus benedeni benedeni: a potential seasonally resolved stable isotope-based climate archive to investigate Pliocene temperatures in the southern North Sea basin
Bivalves record seasonal environmental changes in their shells, making them excellent climate archives. However, not every bivalve can be used for this end. The shells have to grow fast enough so that micrometre- to millimetre-sampling can resolve sub-annual changes. Here, we investigate whether the bivalve Angulus benedeni benedeni is suitable as a climate archive. For this, we use ca. 3-million-year-old specimens from the Piacenzian collected from a temporary outcrop in the Port of Antwerp area (Belgium). The subspecies is common in Pliocene North Sea basin deposits, but its lineage dates back to the late Oligocene and has therefore great potential as a high-resolution archive. A detailed assessment of the preservation of the shell material by micro-X-ray fluorescence, X-ray diffraction, and electron backscatter diffraction reveals that it is pristine and not affected by diagenetic processes. Oxygen isotope analysis and microscopy indicate that the species had a longevity of up to a decade or more and, importantly, that it grew fast and large enough so that seasonally resolved records across multiple years were obtainable from it. Clumped isotope analysis revealed a mean annual temperature of 13.5 ± 3.8 ∘C. The subspecies likely experienced slower growth during winter and thus may not have recorded temperatures year-round. This reconstructed mean annual temperature is 3.5 ∘C warmer than the pre-industrial North Sea and in line with proxy and modelling data for this stratigraphic interval, further solidifying A. benedeni benedeni's use as a climate recorder. Our exploratory study thus reveals that Angulus benedeni benedeni fossils are indeed excellent climate archives, holding the potential to provide insight into the seasonality of several major climate events of the past ∼ 25 million years in northwestern Europe.
Located in Library / RBINS Staff Publications 2023
Article Reference Organic Matter Composition of Biomineral flocs and Its Influence on Suspended Particulate Matter Dynamics Along a Nearshore to Offshore Transect
The seasonal variation in concentration of transparent exopolymer particles (TEPs), particulate organic carbon (POC) and particulate organic nitrogen (PON) were investigated together with floc size and the concentration of suspended particulate matter (SPM) along the cross-shore gradient, from the high turbid nearshore toward the low-turbid offshore waters in the Southern Bight of the North Sea. Our data demonstrate that biophysical flocculation cannot be explained by these heterogeneous parameters, but requires a distinction between a more reactive labile (“fresh”) and a less reactive refractory (“mineral-associated”) fraction. Based on all data, we separated the labile and mineral-associated POC, PON, and TEP using a semi-empirical model approach. The model's estimates of fresh and mineral-associated organic matter (OM) show that great parts of the POC, PON, and TEP are associated with suspended minerals, which are present in the water column throughout the year, whereas the occurrence of fresh TEP, POC, and PON is restricted to spring and summer months. In spite of a constantly high abundance of total TEP throughout the entire year, it is its fresh fraction that promotes the formation of larger and faster sinking biomineral flocs, thereby contributing to reducing the SPM concentration in the water column over spring and summer. Our results show that the different components of the SPM, such as minerals, extracellular OM and living organisms, form an integrated dynamic system with direct interactions and feedback controls.
Located in Library / RBINS Staff Publications 2022
Article Reference Chimpanzees surviving in a fragmented high-altitude forest landscape of the Congolese Albertine Rift
Located in Library / RBINS Staff Publications 2021
Article Reference Revision of the morphology, phylogenetic relationships, behaviour and diversity of the Iberian and Italian ant-like Tachydromia Meigen, 1803 (Diptera: Hybotidae)
Located in Library / RBINS Staff Publications 2021
Article Reference A new species of the genus Stilpon Loew, 1859 from Morocco (Diptera: Empidoidea, Hybotidae)
Located in Library / RBINS Staff Publications 2021 OA
Article Reference First record of the daggerfly Tachypeza yinyang Papp & Földvári in Croatia (Insecta: Diptera, Hybotidae)
Located in Library / RBINS Staff Publications 2021 OA
Article Reference High endemicity in aquatic dance flies of Corsica, France (Diptera, Empididae, Clinocerinae and Hemerodromiinae), with the description of a new species of Chelipoda
Located in Library / RBINS Staff Publications 2021 OA