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Developing Essential Biodiversity Variables for the Southern Ocean: From data gaps to valuable insights
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The Southern Ocean is central to global heat and carbon cycling, connecting all the major ocean basins and regulating Earth’s climate system, and hence providing ecosystem services of global significance. However, its ecosystems are increasingly vulnerable to climate change and localized human-induced pressures, such as (biological) resource extraction, pollution, ship traffic, and tourism. Effective conservation and management require systematic and reliable monitoring frameworks. The Essential Variables concept offers a robust approach to integrate fragmented data, to standardize data collection, and to generate policy-relevant data products enabling informed responses to rapid environmental change. This paper synthesizes the key outcomes of a workshop held in Hobart, Australia, alongside the Southern Ocean Observing System Symposium, in 2023. To advance the adoption, development, and operationalization of Essential Variables tailored to the Southern Ocean, researchers with diverse expertise came together to assess current data gaps in ocean observations and to establish monitoring priorities for marine ecosystems. The workshop provided a dedicated forum to identify key Southern Ocean-specific candidate variables, address methodological challenges, and design pathways for developing a systematic, open, and adaptable framework suited to the region’s unique ecological and environmental conditions. In this paper, we propose Essential Biodiversity Variables that are tailored to the Southern Ocean and are intended to monitor changes in sea ice, planktonic, benthic, and top predator systems. The adoption of Essential Biodiversity Variables specific to the Southern Ocean can enhance our capacity to track biodiversity trends, assess ecosystem health, and inform policy by transforming fragmented data into a cohesive, policy-relevant framework. However, the success of these efforts is only possible by securing sustained funding and enhancing interoperability and collaborations across research groups.This paper as well as the Hobart 2023 workshop are activities endorsed by the UN Decade of Ocean Science for Sustainable Development.
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RBINS Staff Publications 2026 OA
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Genomic history of early dogs in Europe
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The earliest morphologically identifiable dogs are from Europe and date to at least 14,000 years ago1–5, although early remains are also found in other regions. The origin of early dogs in Europe, and their relationships to other dogs, has remained elusive in the absence of genome-wide data. Similarly, although dogs were the only domestic animal to predate agriculture, little is known about how the arrival of Neolithic farmers from Southwest Asia affected the dogs living with European Mesolithic hunter-gatherers. Here we analysed 216 canid remains, including 181 from Palaeolithic and Mesolithic Europe. We developed a genome-wide capture approach that enriched endogenous DNA by 10–100-fold and could distinguish dog from wolf ancestry for 141 of 216 remains. The oldest dog data that we recovered are from a 14,200-year-old dog from the Kesslerloch site in Switzerland, and we find that it shares ancestry with later worldwide dogs—inconsistent with the hypothesis that European Upper Palaeolithic dogs derived wholly from a separate domestication process. The Kesslerloch dog already displays more affinity to Mesolithic, Neolithic and present-day European dogs than to Asian dogs, demonstrating that dog genetic diversification had started well before 14,200 years ago. We find a Neolithic influx of Southwest Asian ancestry into Europe, but this seems to have been of smaller magnitude than in humans, suggesting that Mesolithic dogs contributed substantially to Neolithic, and, ultimately, probably also modern, European dogs.
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RBINS Staff Publications 2026
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Amplified warming and marine heatwaves in the North Sea under a warming climate and their impacts
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The northeast Atlantic and adjacent regions, such as the North Sea, are among the fastest-warming areas in the world. However, the role of climate change and internal variability in marine heatwaves (MHWs) in this region remains poorly understood. This study aims to quantify the relevant changes in sea surface temperature (SST) and MHWs in the North Sea, as well as to identify the leading patterns of interannual MHW variability over more than 4 decades (1982–2024). Our results indicated a new regime shift in the annual mean SST in the North Sea since 2013. Therefore, we examined the relationships between MHW trends and long-term sea surface warming trends to quantify the role of climate change in the intensification of MHWs. We found that the increase in MHWs is related to the significant decadal change in SST over the North Sea and we have revealed that large-scale climate modes, such as the Atlantic Multidecadal Oscillation and the East Atlantic Pattern, play a crucial role in this decadal change in SST. In particular, the SST trend has doubled in the post-2013 period (0.8 °C per decade), compared with the pre-2013 period (0.4 °C per decade), leading to longer and more frequent MHWs. The SST, MHW frequency, and MHW days increased significantly by 0.38 °C per decade, 1.04 events per decade, and 17.27 d per decade, respectively, over the entire study period. After removing the long-term sea surface warming trend before MHW detection, all MHW features exhibited insignificant trends, indicating that the long-term SST trend is the primary driver of the observed long-term MHW trend in the North Sea region, thereby confirming the crucial role of mean SST changes in MHWs in this region. Furthermore, we found that 80 % of the observed trend in MHW frequency is attributed to long-term warming, while the rest is attributed to internal variability. The SST record in May 2024, manifest by the longest (27 d) and most intense (2.2 °C) MHW event, is attributed to an anomalous anticyclonic atmospheric circulation over the Baltic Sea and southern Norway, which enhanced solar radiation over the North Sea. Finally, we also investigated how the chlorophyll a concentration responded to the MHW, revealing a decrease in the deep and cold-water regions of the northern North Sea and an increase in the shallow and warm-water areas of the southern North Sea.
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RBINS Staff Publications 2025
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The BiogeochemicAl Model for Hypoxic and Benthic Influenced areas: BAMHBI v1.0
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This paper describes the ocean BiogeochemicAl Model for Hypoxic and Benthic Influenced areas (BAMHBI). BAMHBI is a moderate complexity marine biogeochemical model that describes the cycling of carbon, nitrogen, phosphorus, silicon and oxygen through the marine foodweb. It involves 22 state variables, extends from bacteria up to mesozooplankton and includes three phytoplankton functional types (PFTs), two zooplankton size-classes, a microbial loop with several classes of detritic materials. Five optional modules are available allowing to extend the model with the explicit modelling of Chlorophyll a (Chl a) in each PFT, benthic degradation, gelatinous dynamics, particles aggregation and the carbonate system. BAMHBI describes the degradation of organic matter according to oxygenation conditions using an approach similar to that used in the sediment to simulate early diagenesis. The model is particularly appropriate for modelling low oxygen environments and the generation of sulfidic waters. An optional benthic module solves the degradation of sedimentary organic matter and the benthic-pelagic fluxes of solutes using an efficient formulation based on meta-modelling. This paper describes in details model formulations, implementation and coupling with the physics. BAMHBI's code is written in Fortran and can be coupled with many hydrodynamical models. Two case studies of application of BAMHBI in the Black Sea are described. One describes the application of BAMHBI to simulate the biogeochemical dynamics of the northwestern shelf during the eutrophication period. In particular, the ability of BAMHBI to simulate the oxygen dynamics at seasonal and interannual scales is assessed with a focus on the simulation of bottom hypoxia. We highlight the results of the benthic modelling module and its ability to represent benthic-pelagic fluxes. The second case study compares the BAMHBI simulated Chl a, oxygen and nitrate dynamics in the deep sea with respect to biogeochemical Argo.
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RBINS Staff Publications 2026
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Local and landscape effects on ant functional and taxonomic compositions across green spaces of a tropical metropolis
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Urbanization is one of the main processes driving environmental transformation, altering the structure and functioning of biological communities across multiple spatial scales. In this study, we evaluated the effects of local and landscape variables on the taxonomic and functional composition of ants in different types of urban green spaces in the city of Salvador, Brazil. A total of 62 sampling points were surveyed across forest fragments, squares, streets medians, and vacant lots, using specific methods for both ground-dwelling and arboreal strata. We recorded 93 ant species distributed among 20 functional groups. Our results indicated that, at the local scale, leaf litter depth was the primary explanatory factor for both taxonomic and functional richness, as well as for functional composition. At the landscape scale, human population density and vegetation cover surrounding the sampling points influenced the distribution of species and functional groups, revealing contrasting patterns between specialist and generalist species. While arboreal, hypogeic, and fungivorous ants were more dependent on structurally complex and conserved habitats, epigeic, omnivorous, and some predatory species were favored in more simplified and heterogeneous environments. These findings highlight that biodiversity conservation in urban areas depends on integrated strategies across multiple scales, encompassing management practices that ensure local structural complexity alongside planning that promotes habitat heterogeneity at the landscape level. Overall, the study demonstrates that the arrangement and quality of urban green spaces play a central role in maintaining both taxonomic and functional diversity of ant communities in tropical cities.
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RBINS Staff Publications 2026
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Threshold values on environmental chemical contaminants in seafood in the European Economic Area
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Seafood safety regulation within the European Economic Area has been strongly harmonised, including uniformisation of maximum levels on contaminants and toxins in seafood. Nevertheless, individual countries still have national limit values for different contaminant groups. This publication summarizes currently existing maximum levels on environmental chemical contaminants in seafood and seaweed that are established within the European Economic Area at international or national level. Maximum levels are compared to legal thresholds in other North Atlantic countries that are member of the International Council for the Exploration of the Seas (ICES), i.e. US, Canada and Russia, as well as the international food standards of the Codex Alimentarius. The identification of seafood safety regulatory differences allows to identify current challenges, associated to different topics: (1) contaminants in seafood, (2) contaminants in seaweed and (3) natural aquatic toxins. It can be concluded that increased harmonisation within and between geographical regions e.g. on seaweed regulations, can be beneficial from both a health and economic perspective. Constantly evolving knowledge on contaminants of emerging concern and new or emerging toxins triggers a continuous process of updating seafood regulations. Due to the health benefits of seafood consumption, a balance between risks and benefits is essential, as considered in EFSA seafood consumption advice.
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RBINS Staff Publications 2022
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Enhanced removal of warfare agent tri-nitro-toluene by a <i>Methylophaga</i>-dominated microbiome
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Historical exposure of the marine environment to 2,4,6-trinitrotoluene (TNT) happened due to the dumping of left-over munitions. Despite significant research on TNT decontamination, the potential of marine microbiome for TNT degradation remains only little explored. In this study, TNT degradation experiments were conducted with sediment located near the World War I munition dumpsite – Paardenmarkt in the Belgian part of North Sea. A slow removal was observed using TNT as sole source of C and N, which could be enhanced by adding methanol. Degradation was reflected in nitro-reduced metabolites and microbial growth. 16S Illumina sequencing analysis revealed several enriched genera that used TNT as a sole source of C and N - Colwellia, Thalossospira, and Methylophaga. Addition of methanol resulted in increased abundance of Methylophaga, which corresponded to the rapid removal of TNT. Methanol enhanced the degradation by providing additional energy and establishing syntrophic association between methanol-utilizing and TNT-utilizing bacteria.
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RBINS Staff Publications 2023
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Evaluating the toxicity of sea-dumped conventional and chemical munition degradation products to fish and human cells using a combination of cell viability assays
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The disposal of munitions in marine coastal areas after World Wars I and II has raised significant concerns about environmental contamination and human health risks. This study investigates the acute cytotoxicity of munition-related chemicals commonly detected near marine dumpsites, focusing on degradation products of explosives and related compounds (E&RC) and degradation products of chemical warfare agents and related compounds (CWA&RC). The research examines three CWA&RC (1,4-oxathiane, 1,4-dithiane, thiodiglycol) and four E&RC (2,4,6-trinitrotoluene, tetryl, 1,3-dinitrobenzene, picric acid) using the RTgill-W1 cell line (rainbow trout gill cells) as a proxy for fish toxicity and human cell lines (Caco2 and HepG2) to model potential human exposure via contaminated seafood. The results indicate low acute cytotoxicity of CWA&RC, while E&RC exhibit significantly higher toxicity. Notably, the EC10 and EC50 values for tetryl and 1,3-DNB in RTgill-W1 align with concentrations detected near North American dumpsites, reflecting environmentally relevant conditions. The study also reveals inter-species and inter-organ variability in toxicity mechanisms, identifying potential adverse outcome pathways such as AOP 220. These findings highlight the need for further research into chronic exposure scenarios at environmentally realistic concentrations and contribute crucial data to understanding the risks posed by the degradation products of these chemicals to aquatic life and human health.
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RBINS Staff Publications 2025
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Diagnosing the Flocculation–Transport Dynamics of Suspended Particulate Matter Using a Two-Class Population Balance Model and Bayesian Calibration
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Abstract The dynamics of suspended particulate matter (SPM) plays a crucial role in determining water quality, sediment transport, and biogeochemical cycles in inland, estuarine, and coastal water resources. Flocculation processes strongly influence the SPM dynamics via aggregation and breakage under various hydrodynamic and biogeochemical conditions. This study introduces a mechanistic and diagnostic framework that combines a two-class population balance equation (TCPBE) model with Bayesian calibration to simulate flocculation?transport behavior in both laboratory- (time-dependent batch) and field-scale (one-dimensional vertical) systems. Laboratory experiments with biopolymer?clay and microalgae?clay mixtures and field observations from an estuarine turbidity maximum zone are used to derive a comprehensive data set for model validation. Bayesian inference enables the estimation of uncertain model parameters while characterizing their statistical properties, thus supporting the mechanistic interpretation of flocculation dynamics. By quantifying how ionic strength and microbial physiology regulate flocculation kinetics and elucidating the turbulence-driven coupling between flocculation kinetics and sediment transport over tidal cycles, the framework demonstrates its suitability as a process-based diagnostic tool capable of effectively capturing SPM dynamics under various conditions. This framework has strong potential to advance the understanding of flocculation dynamics and support a range of applications in inland and estuarine sediment-laden water systems, including river, reservoir, esturine and coastal waters.
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RBINS Staff Publications 2026
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The importance of long-time series of benthic data for science and management
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Benthic organisms are important ecological receptors, playing fundamental roles across seafloor ecosystems, delivering some of the most important functions in the marine environment. Some of these key benthic functions include nutrient cycling, food provision for higher trophic levels, and carbon storage. Over the past 6 years, benthic monitoring has faced growing complexity, driven by diminishing funding and the constraints imposed by the COVID-19 pandemic. These challenges underscore the pressing need to recognize the enduring value of benthic time series in supporting monitoring, management, and modelling efforts. These long-term data sets have been critical to advance our current understanding into the areas of cumulative effects, conservation, management of Marine Protected Areas (MPAs), development of indicators, and assessment of climate-driven changes in marine ecosystems. Ongoing expert group discussions consistently affirm both the relevance and necessity of continuing to collect these vital data sets. However, the focus on emerging technologies and so-called ‘cutting-edge’ approaches sometimes leads to the undervaluation and compromising some of these long-term series. We contend that a comprehensive understanding of benthic ecology, essential for robust marine management, reliable numerical analysis, and taxonomic consistency, cannot be achieved without the continuity provided by long-term data. Such time series are indispensable for tracking patterns of change and assessing responses across diverse human activities and seafloor ecosystems. While our research has concentrated on soft sediment environments, many of the key principles and recommendations outlined here are broadly applicable to other ecosystem types.
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RBINS Staff Publications 2026
