Moderately diverse trace fossil assemblages occur in the Eocene Tambak Member of the Tanjung Formation, in the Asem Asem Basin on the southern coast of South Kalimantan. These assemblages are fundamental for establishing depositional models and paleoecological reconstructions for southern Kalimantan during the Eocene and contribute substantially to the otherwise poorly documented fossil record of birds in Island Southeast Asia. Extensive forest cover has precluded previous ichnological analyses in the study area. The traces discussed herein were discovered in newly exposed outcrops in the basal part of the Wahana Baratama coal mine, on the Kalimantan coast of the Java Sea. The Tambak assemblage includes both vertebrate and invertebrate trace fossils. Invertebrate traces observed in this study include Arenicolites, Cylindrichnus, Diplocraterion, Palaeophycus, Planolites, Psilonichnus, Siphonichnus, Skolithos, Thalassinoides, Taenidium, and Trichichnus. Vertebrate-derived trace fossils include nine avian footprint ichnogenera (Aquatilavipes, Archaeornithipus, Ardeipeda, Aviadactyla, cf. Avipeda, cf. Fuscinapeda, cf. Ludicharadripodiscus, and two unnamed forms). A variety of shallow, circular to cylindrical pits and horizontal, singular to paired horizontal grooves preserved in concave epirelief are interpreted as avian feeding and foraging traces. These traces likely represent the activities of small to medium-sized shorebirds and waterbirds like those of living sandpipers, plovers, cranes, egrets, and herons. The pits and grooves are interpreted as foraging traces and occur interspersed with both avian trackways and invertebrate traces. The trace fossils occur preferentially in heterolithic successions with lenticular to flaser bedding, herringbone ripple stratification, and common reactivation surfaces, indicating that the study interval was deposited in a tidally influenced setting. Avian trackways, desiccation cracks, and common rooting indicate that the succession was prone to both subaqueous inundation and periodic subaerial exposure. We infer that the Tambak mixed vertebrate-invertebrate trace fossil association occurred on channel-margin intertidal flats in a tide-influenced estuarine setting. The occurrence of a moderately diverse avian footprint and foraging trace assemblage in the Tambak Member of the Tanjung Formation illustrates that shorebirds and waterbirds have been using wetlands in what is now Kalimantan for their food resources since at least the late Eocene.
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RBINS Staff Publications 2024
While sequencing ancient DNA (aDNA) from archaeological material is now commonplace, very few attempts to sequence ancient transcriptomes have been made, even from typically stable deposition environments such as permafrost. This is presumably due to assumptions that RNA completely degrades relatively quickly, particularly when dealing with autolytic, nuclease-rich mammalian tissues. However, given the recent successes in sequencing ancient RNA (aRNA) from various sources including plants and animals, we suspect that these assumptions may be incorrect or exaggerated. To challenge the underlying dogma, we generated shotgun RNA data from sources that might normally be dismissed for such study. Here, we present aRNA data generated from two historical wolf skins, and permafrost-preserved liver tissue of a 14,300-year-old Pleistocene canid. Not only is the latter the oldest RNA ever to be sequenced, but it also shows evidence of biologically relevant tissue specificity and close similarity to equivalent data derived from modern-day control tissue. Other hallmarks of RNA sequencing (RNA-seq) data such as exon-exon junction presence and high endogenous ribosomal RNA (rRNA) content confirms our data’s authenticity. By performing independent technical library replicates using two high-throughput sequencing platforms, we show not only that aRNA can survive for extended periods in mammalian tissues but also that it has potential for tissue identification. aRNA also has possible further potential, such as identifying in vivo genome activity and adaptation, when sequenced using this technology.
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RBINS Staff Publications 2019
Most coastal glaciers on the West Antarctic Peninsula are in retreat. Glacial ice scouring and lithogenic particle runoff increase turbidity and shape soft sediment benthic communities. This, in turn, has the potential to induce a shift in these systems from an autotrophic to a heterotrophic state. In this study, we investigated the influence of glacial runoff on carbon flows in the softsediment food web of Potter Cove, a well-studied shallow fjord located in the northern region of the West Antarctic Peninsula. We constructed linear inverse food web models using a dataset that includes benthic carbon stocks as well as carbon production and respiration rates. The dataset offers detailed spatial information across three locations and seasonal variations spanning three seasons, reflecting different degrees of disturbance from glacial melt runoff. In these highly resolved food web models, we quantified the carbon flows from various resource compartments (phytoplankton detritus, macroalgae, microphytobenthos, sediment detritus) to consumers (ranging from prokaryotes to various functional groups in meio- and macrofauna). Locations and seasons characterized by high glacial melt runoff exhibited distinct patterns of carbon flow compared to those with low glacial melt runoff. This difference was primarily driven by a less pronounced benthic primary production pathway, an impaired microbial loop and a lower secondary production of the dominant bivalve Aequiyoldia eightsii and other infauna in the location close to the glacier. In contrast, the bivalve Laternula elliptica and meiofauna had the highest secondary production close to the glacier, where they are exposed to high glacial melt runoff. This study shows how the effects of glacial melt propagate from lower to higher trophic levels, thereby affecting the transfer of energy in the ecosystem.
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RBINS Staff Publications 2024
