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Article Reference Lessons from assembling UCEs: A comparison of common methods and the case of Clavinomia (Halictidae)
Located in Library / RBINS Staff Publications 2024
Proceedings Reference Proceedings of the 4th International Meeting of Agora Paleobotanica, Brussels 2016
Located in Library / RBINS Staff Publications 2016
Article Reference Aparallactus modestus ubangensis (Boulenger, 1897). Ubangi Centipede-eater. Reproduction.
Located in Library / RBINS Staff Publications 2019
Article Reference Micro-computed tomography for natural history specimens: a handbook of best practice protocols
Micro-computed tomography (micro-CT or microtomography) is a non-destructive imaging technique using X-rays which allows the digitisation of an object in three dimensions. The ability of micro-CT imaging to visualise both internal and external features of an object, without destroying the specimen, makes the technique ideal for the digitisation of valuable natural history collections. This handbook serves as a comprehensive guide to laboratory micro-CT imaging of different types of natural history specimens, including zoological, botanical, palaeontological and geological samples.
Located in Library / RBINS Staff Publications 2019
Article Reference Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia
Grey wolves (Canis lupus) are one of the few large terrestrial carnivores that have maintained a wide geographical distribution across the Northern Hemisphere throughout the Pleistocene and Holocene. Recent genetic studies have suggested that, despite this continuous presence, major demographic changes occurred in wolf populations between the Late Pleistocene and early Holocene, and that extant wolves trace their ancestry to a single Late Pleistocene population. Both the geographical origin of this ancestral population and how it became widespread remain unknown. Here, we used a spatially and temporally explicit modelling framework to analyse a data set of 90 modern and 45 ancient mitochondrial wolf genomes from across the Northern Hemisphere, spanning the last 50,000 years. Our results suggest that contemporary wolf populations trace their ancestry to an expansion from Beringia at the end of the Last Glacial Maximum, and that this process was most likely driven by Late Pleistocene ecological fluctuations that occurred across the Northern Hemisphere. This study provides direct ancient genetic evidence that long‐range migration has played an important role in the population history of a large carnivore, and provides insight into how wolves survived the wave of megafaunal extinctions at the end of the last glaciation. Moreover, because Late Pleistocene grey wolves were the likely source from which all modern dogs trace their origins, the demographic history described in this study has fundamental implications for understanding the geographical origin of the dog.
Located in Library / RBINS Staff Publications 2020
Article Reference Metabarcoding free‐living marine nematodes using curated 18S and CO1 reference sequence databases for species‐level taxonomic assignments
Located in Library / RBINS Staff Publications 2018
Article Reference Tributyltin: A Bottom–Up Regulator of the Crangon crangon Population?
The restrictions and the concerted action of the global ban on the use and presence of tributyltin (TBT) in marine applications to protect ecosystems in the marine environment in 2008 was mainly based on the economic impact on shellfish industries and the dramatic extinction of local mollusk populations in the past. In contrast to the vast datasets on effects on mollusks, the knowledge on impacts on species from other taxa remained in the uncertain until almost two decades ago. The assumption on a long-term TBT-mediated pernicious metabolic bottom–up regulation of the crustacean Crangon crangon population was provoked by the outcome of an EU-project ‘Sources, Consumer Exposure and Risks of Organotin Contamination in Seafood.’ This study reported high TBT body burdens in C. crangon in 2003, at the start of the transition period to the global ban. Experimental research on the TBT impact in C. crangon focused on agonistic interference with natural ecdysteroid hormones at the metabolic pathways regulating growth and reproduction and the biogeochemical distribution of the chemical. In this paper, metabolic, topical and population-relevant biological endpoints in C. crangon and other crustaceans are evaluated in relation to the temporal and spatial trends on TBT’s occurrence and distribution in the field during and after the introduction of the tributyltin restrictions and endocrine-related incidents. Arguments are forwarded to relate the German Bight incident on growth and reproduction failure in the C. crangon population, despite the lack of direct evidence, to the pernicious impact of tributyltin in 1990/91 and previous years. The extreme occurrence of TBT in C. crangon from other parts of the southern North Sea and evidence on the high body burdens as dose metrics of exposure also feeds the suspicion on detrimental impacts in those areas. This paper further demonstrates the complexity of distinguishing and assessing the individual roles of unrelated stressors on a population in an integrated evaluation at the ecosystem level.
Located in Library / RBINS Staff Publications 2019
Article Reference Arion vulgaris Moquin-Tandon, 1855 à Vogar en Islande
Located in Library / RBINS Staff Publications 2021
Article Reference On a new species of the genus Cyprinotus (Crustacea, Ostracoda) from a temporary wetland in New Caledonia (Pacific Ocean), with a reappraisal of the genus
The New Caledonia archipelago is known for its high level of endemism in both faunal and floral groups. Thus far, only 12 species of non-marine ostracods have been reported. After three expeditions to the main island of the archipelago (Grande Terre), about four times as many species were found, about half of which are probably new. Here, we describe a new species, Cyprinotus drubea sp. nov., which is characterised mainly by the hyper-developed dorsal hump on the right valve, much larger than in any other known Recent species in this genus. After a literature study of the other presumed species in Cyprinotus Brady, 1886, we retain seven Recent species in the genus, including the present new species. Cyprinotus crenatus (Turner, 1893), C. dentatus (Sharpe, 1910), C. flavescens Brady, 1898, C. inconstans Furtos, 1936, C. newmexicoensis Ferguson, 1967, C. ohanopecoshensis Ferguson, 1966, C. pellucidus (Sharpe, 1897), C. scytodus (Dobbin, 1941) and C. sulphurous Blake, 1931 are here all referred to the genus Heterocypris s. lat. Claus, 1892. Cyprinotus unispinifera Furtos, 1936 is assigned to the genus Cypricercus Sars, 1895. Cyprinotus tenuis Henry, 1923, C. fuscus Henry, 1919 and C. carinatus (King, 1855) are here classified as doubtful species. A checklist of the 14 non-marine ostracods, now including Cyprinotus drubea sp. nov. and Cypris granulata (Daday, 1910), thus far reported from New Caledonia, is provided. Herpetocypris caledonica Méhes, 1939 and H. caledonica var. minor Méhes, 1939 are synonymised with Candonocypris novaezelandiae (Baird, 1843).
Located in Library / RBINS Staff Publications 2019
Article Reference The Freshwater Information Platform: An online network supporting freshwater biodiversity research and data publishing
Species distribution data are crucial for understanding biodiversity dynamics and the underlying drivers. For freshwaters, which cover only a small proportion of the world's surface, but host a large variety of species, knowledge on species occurrences is extremely important as they are among the most endangered ecosystems globally. However, a huge body of data gathered by scientists and water managers is currently difficult to access: systematic data publishing practices have not been fully adopted yet and data embedded in scientific papers and research project websites are often challenging to extract. At the same time, data and knowledge generated through publically-funded research or monitoring programmes are considered a common good. The Freshwater Information Platform (FIP) aims at pooling freshwater related research information from multiple projects and initiatives to make it easily accessible for scientists, water managers, conservationists and the interested public. The FIP consists of several major components, three of which form its “data publication unit”: The Freshwater Metadatabase (1) is an online tool where data characterising and documenting actual datasets can be entered in a simple way. With one more mouseclick these metadata can then be published as open access articles in the connected Freshwater Metadata Journal. The second part of the unit is the Freshwater Biodiversity Data Portal (2), where we aim to mobilise and publish the connected freshwater biodiversity data (occurrence records) through GBIF (Global Biodiversity Information Facility). The use of collected datasets for large-scale analyses and models is demonstrated in the Global Freshwater Biodiversity Atlas (3) that publishes interactive online maps featuring research results on freshwater biodiversity, threats and conservation priorities. Here, we focus on introducing these components as tools to streamline open access freshwater data publication, arguing it will improve the capacity to protect and manage freshwater biodiversity in the face of global change. We further present linkages to and cooperations with other key initiatives in the field, namely the "Alliance for Freshwater Life" as well as "FreshwaterBON".
Located in Library / RBINS Staff Publications 2019