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Article Reference Planting food forests can increase soil biodiversity in agricultural landscapes of Northwest Europe
Food forests are an emerging agroecosystem in the temperate zone, aimed at providing food while supporting high levels of biodiversity. How food forestry impacts belowground biodiversity is, however, largely unknown. We compared communities of 12 taxonomic groups of soil organisms between 15 food forests and nearby grasslands, croplands and forests in Northwest Europe. Food forest soil communities appeared to differ from communities in grass- and croplands and more closely resembled forest communities in terms of total biomass or number of individuals of most taxonomic groups, with especially higher numbers of most macroarthropods. In terms of composition, food forest communities of most groups were overall intermediate between those in grass- and croplands and those in forests. For microorganismal and microfaunal groups, food forest communities bore a greater resemblance to grass- and cropland communities than to forest communities. Besides a higher alpha-diversity for non-arbuscular mycorrhizal fungi and certain macroarthropod groups in food forests, differences in alpha- and beta-diversity were overall limited. As food forests appear to support different soil communities than grass- and croplands, planting food forests could increase soil biodiversity in agricultural landscapes.
Located in Library / RBINS Staff Publications 2026 OA
Article Reference Spiroplasma Display an Intricate Continuum of Infection Heterogeneity and Persistence in Myrmica Ants
Many bacterial taxa evolved facultative symbiotic associations with insects and spread through host populations by horizontal and maternal transmission. Co-infection at the individual host level may facilitate or constrain the spread of facultative symbi- onts. Due to insufficiently detailed genotyping, co-infections of maternally transmitted symbionts often remain hidden, limit- ing our understanding of (co-)infection dynamics. Spiroplasma bacteria exhibit multiple independent origins of symbiosis with insects and have poorly understood patterns of transmission and co-infection. Here, we examined these traits of Spiroplasma symbiosis using Myrmica ants, a system known for high frequencies of single Spiroplasma infections. Through exhaustive genotyping of 75 colonies across seven Myrmica species, we uncovered multiple cryptic co-infections involving two distinct Spiroplasma clades that display significantly different infection frequencies in workers. Within Myrmica ruginodis, infection heterogeneity was contingent on ant caste and was lower in workers. Remarkably, the sMyr Spiroplasma variant infected four Myrmica species and was widespread in queens and workers. We provide phylogenomic and functional genomic support for an exceptionally stable symbiosis with maternally acquired sMyr, with a predicted infection persistence of seven million years in the Myrmica scabrinodis species group. Our findings reveal that Spiroplasma can display complex infection heterogeneity and evolve an evolutionary stable maternally acquired infection within insect hosts.
Located in Library / RBINS Staff Publications 2026 OA
Article Reference On the Darwin Core Term dwc:habitat, and the Need to Adopt a European Vocabulary Based on NATURA2000 and EUNIS Classifications, with a Comment on International Applicability
Darwin Core (DwC) is an essential standard for sharing biodiversity data. However, the term dwc:habitat suffers from an inherent ambiguity due to its free-text format. This ambiguity severely compromises the interoperability and reusability of habitat data, hindering large-scale comparative analyses and impeding the formulation of effective conservation policies. As a solution to this problem, we propose adopting controlled vocabularies and ontologies. The NATURA2000 and EUNIS habitat classifications emerge as ideal candidates to standardize dwc:habitat. NATURA2000 offers a consolidated regulatory framework and habitat type definitions with direct implications for European conservation, while EUNIS provides a more comprehensive, hierarchical, and scientifically grounded system with the ability to cross-map with other standards. The implementation of such vocabularies would significantly improve the quality, consistency, interoperability, and reusability of habitat data, more robustly supporting scientific research and conservation policies.
Located in Library / RBINS Staff Publications 2026 OA
Article Reference Uncovering ant diversity across forest successional stages in the Yangambi Biosphere Reserve (DRC): Insights from Winkler and pitfall trap sampling
Litter ant communities constitute an important component of biodiversity in tropical regions. They are currently used in several ecosystem management programmes to as- sess forest health. The aim of this study was to uncover the ant diversity across forest successional stages (fallow land, secondary forest and primary forest) in the Yangambi Biosphere Reserve, the Democratic Republic of the Congo. These habitats were sam- pled at six localities using pitfall traps and Winkler extractions. In total, 190 ant species belonging to 50 genera and eight subfamilies were recorded in the Yangambi Biosphere Reserve. Ant diversity increased significantly along the successional gradient, being lowest in fallow land, intermediate in secondary forest, and highest in primary forest. Sixty ant species were shared across all three habitats, while each habitat supported a distinct assemblage of species. Primary forests contained the greatest number of exclu- sive species, followed by secondary forests and fallow land. Winkler extractors captured substantially more ant species than pitfall traps, recording nearly 50% greater species richness. However, a significant portion of the ant fauna in the Yangambi Biosphere Re- serve likely remains unrecorded, and additional sampling methods (like arboreal traps, net sweeping and baiting) could provide a more complete picture of its biodiversity.
Located in Library / RBINS Staff Publications 2026 OA
Inproceedings Reference Optimal geodata centralization and disclosure as support for subsurface exploration
It is widely known that the subsurface will play a crucial role in the transition towards a carbon-neutral society, with the aid of technologies like geothermal energy, CO2-storage, .... Nevertheless, still a lot of aspects concerning the subsurface, its structure and characteristics remain to be investigated to facilitate the use of underground space in an efficient and safe way. In-depth investigation of the subsurface with conventional techniques such as seismic campaigns or drillings requires high investments, and it is not always straightforward to determine the success-rate upfront. This leads to geodata collections typically displaying a large variety and scatter, both concerning data (type) availability and in spatial distribution. Additionally, incorporating subsurface knowledge from neighboring countries often is challenging, but at the same time indispensable to increase understanding of the own subsurface, not least because some projects may display cross-border influences. It is clear that subsurface exploration benefits from a cross-border and cross-thematic data collection and interpretation approach. One way to organize such data centralization was explored in the framework of the European Horizon2020-project GeoConnect³d, by means of constructing a Structural Framework (SF) and a database of Geomanifestations (GM) for several pilot study areas. The Structural Framework defines geological units by its limits (e.g., faults, terrane boundaries, ...). All known limits and associated parameters are structured in a uniform and inter-connected way. Furthermore, the SF is designed on multiple zoom-levels, hence it can serve as a real backbone to integrate multiple other subsurface models of various scale and resolution together. Geomanifestations are anomalous observations covering a wide range of geo-disciplines, including —but not limited to— temperature, geochemistry, mineralogy and even geophysics data. Such irregularities are too often excluded or ignored in view of the larger cloud of ‘normal’ datapoints. Nevertheless, precisely these anomalies can be of great value for identifying subsurface processes and serve as an excellent pathway for communication to non-experts, and also as guideline for further research. In addition to GIS- and attribute-information, Factsheets summarize the relations between individual geomanifestations, and, if applicable, their connection to the Structural Framework. Especially the latter, the combination of the (independent) elements SF and GM, gives a powerful tool that allows exploring the subsurface in an original and cost-efficient way. The newly gained insights can be directly linked and are extremely relevant to the use of the subsurface, either as storage space or as renewable/green energy-source. But it goes further than that. The overall usability of the SF and GM database is far more fundamental, as it gives innovative clues about characteristics and processes at play in the subsurface, such as fault permeability and connectivity, the presence of advection cells in the upper crust, or gas origin and migration pathways. To quote just one example; in the area of Spa, Belgium, elevated 3He/4He-ratios were analyzed (Griesshaber et al., 1992), a parameter that can highlight mantle gas contribution in gas seeps (White, 2013). This observation was unexpected given the far distance from any volcanic activity, but suggests the presence of deep-seated, transcrustal faults and/or a large-distance connectivity till the Eifel area where mantle-derived magma was involved in recent volcanism. When indirect indications like this are not considered further, such valuable subsurface knowledge is easily overlooked and not at all taken into account for investigating in more detail in the future. Even when limited resources or funding is available, the above-illustrated SF+GM approach can shed new light on properties and processes of the subsurface, given its novel and multidisciplinary approach. An inherent drawback, however, is that such a database is never complete and includes information from a variety of sources. Not only does this demands careful consideration on which data is included (or not), it also has to be taken into account for future database expansion as well as for data interpretation. Simple visualizations on a map without further (geological) background, e.g., combining both surface and at depth data as is the case for Wiesbaden, Germany (Mittelbach & Siebert, 2014), may lead to false conclusions. However, the provided Factsheets and metadata can help in this. Furthermore, at this moment, a large proportion of the entries depends on the availability of literature data, which implies some data source bias is unavoidable. For example, CO2-data typically is measured for springs and streams, while dry CO2-seeps easier remain unnoticed and therefore are reported less consistently. New data collection campaigns, possibly including bio-indicators like plants or ants (e.g., Berberich & Schreiber, 2013), can provide a good starting point for this. The uniform and well-designed structure of the database allows very easy expansion, be it for newly discovered faults, additional geomanifestation types, or parameter updates of either part. In addition, as demonstrated in the GeoConnect³d project, the SF+GM approach is fully transferable to other study areas. This clears the way for a cost-efficient cross-border exploration of the subsurface with wins for both the academic world and common public (geoheritage, education, ...), and significantly contributes to a more data-supported outline for subsurface management. This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 731166. References Berberich, G., & Schreiber, U., 2013. GeoBioScience: Red Wood Ants as Bioindicators for Active Tectonic Fault Systems in the West Eifel (Germany). Animals, 3, 475-498. Griesshaber, E., O'Nions, R.K. & Oxburg, E.R., 1992. Helium and carbon isotope systematics in crustal fluids from the Eifel, the Rhine Graben and Black Forest, F.R.G. Chemical Geology, 99, 213-235. Mittelbach, G. & Siebert, S., 2014. Gutachten zur Festsetzung eines Heilquellenschutzgebietes für die Heilquellen (Große und Kleine Adlerquelle, Schützenhofquelle, Kochbrunnen, Salmquelle und Faulbrunnen) von Wiesbaden, Stadt Wiesbaden (WSG-ID 414-005), Wiesbaden, pp. 1-52. White, W.M., 2013. Chapter 12: Noble Gas Isotope Geochemistry, Isotope Geochemistry course notes. Cornell University.
Located in Library / RBINS Staff Publications 2021 OA
Inproceedings Reference Reading Minerals: Rare Element Enrichment, the Magmatic-Hydrothermal Transition, and Geochemical Exploration of Lithium Pegmatites in Ireland
The battery market for electric vehicles and renewable energy storage is dominated by rechargeable lithium-ion batteries, making lithium supply essential to climate action through decarbonization. In 2019, more than half of the world's lithium was sourced from lithium pegmatites of the Li-Cs-Ta (LCT) family, predominantly from Australia. Current global lithium supply involves long diesel-fueled maritime transport routes, which counteracts lithium's role in climate action. Responsible consumption and production require shorter supply chains from deposit to battery. Reading the mineralogical record of LCT pegmatite deposits can help address the challenge of reducing the climate impact of lithium production, by informing deposit models, mineral exploration, and geometallurgy, therefore promoting local supply. Our research focuses on a belt of LCT pegmatites, which is located along the eastern margin of the late-Caledonian S-type Leinster Batholith, southeast Ireland. The LCT pegmatites are hosted by a major regional shear zone and are part of a tin-lithium province that stretches subparallel to the Iapetus suture from Europe through Nova Scotia to North and South Carolina. We investigated crystal chemical zoning in muscovite, cassiterite, and columbite-tantalite using petrography, scanning electron microscopy, and LA-ICP-MS chemical mapping. The zoning patterns record that pegmatite rare element mineralization resulted from an interplay of magmatic crystallization, metasomatism, and hydrothermal processes. Late-stage metasomatic alteration led to partial resorption of early minerals including the lithium ore-mineral spodumene, followed by dispersion of lithium and other rare elements into country rocks, mostly within dark mica. Dispersion led to formation of geochemical halos around the LCT pegmatites with the potential to use country-rock lithogeochemistry and mica composition as geochemical vectoring tools. Geochemistry of mica in the granite host analyzed by handheld LIBS has been found to exhibit coherent spatial patterns occurring adjacent to and above LCT pegmatites known at depth from drilling. These channels of mineral-specific geochemical information are distinct from soil geochemical patterns and are not influenced by the same secondary, surface processes such as dilution. As outcrop is virtually absent in the study area, regional stream sediment geochemistry data (Geological Survey Ireland) was assessed as an LCT pegmatite exploration tool. After correcting for geologic background using a linear regression approach, catchments containing LCT pegmatites show high residuals for concentrations of both tantalum and tin. The mineralogy of stream sediment samples from a subsample of these catchments was subsequently analyzed to characterize the host minerals of tin and tantalum. Cassiterite and columbite-tantalite were identified, and both show geochemical and textural signatures that correspond to the zoning patterns mentioned above, which indicates that these minerals were derived from the local LCT pegmatites. These results suggest that, when regional geology and tectonic setting are prospective, lithium pegmatite prospectivity can be further assessed for tin-tantalum associations in (often publicly available) regional stream sediment data. Following geospatial analysis, stream sediment samples could be obtained from individual prospective catchments and their mineralogy analyzed. Local-scale geochemical surveys could follow where stream sediments of prospective catchments contain tin and tantalum oxides with chemistries and textures indicative of a lithium pegmatite source.
Located in Library / RBINS Staff Publications 2021
Article Reference Medieval fish remains on the Newport ship identified by ZooMS collagen peptide mass fingerprinting
Fish represent a key economic, social and ecological group of species that humans have exploited for tens of thousands of years. However, as many fish stocks are going into decline and with little known about the anthropogenic impacts on the health of the marine ecosystem pre-Industrial Revolution, understanding historical and archaeological exploitation of fish species is key to accurately modelling these changes. Here, we explore the potential of collagen peptide mass fingerprinting (also known as Zooarchaeology by Mass Spectrometry, or ZooMS) for identifying fish remains from the Medieval (fifteenth century) Newport ship wreck (Wales, UK), and in doing so we establish a set of biomarkers we consider useful in discriminating between European fish taxa through the inclusion of over 50 reference taxa. The archaeological results identified nine distinct taxonomic groups, dominated by ling (> 40%), and a substantial amount of cod (> 20%) and hake (~ 20%). The vast majority of samples (> 70%) were identified to species level, and the inability to identify the remaining taxonomic groups with confidence using ZooMS was due to the fact that the reference collection, despite being relatively large in comparison to those presented in mammalian studies, reflects only a small proportion of fish biodiversity from this region. Although the results clearly demonstrate the potential for ZooMS as a means of fish bone identification, the sheer number of different fish species that potentially make up ichthyoarchaeological assemblages leads to obvious requirements for the analysis on much greater numbers of modern reference specimens, or the acquisition of collagen sequences.
Located in Library / RBINS Staff Publications 2022
Article Reference application/x-troff-ms From spawning to first-year recruitment: the fate of juvenile sole growth and survival under future climate conditions in the North Sea
This study shows the effect of climate change on the growth and survival of early life history stages of common sole (Solea solea) in different nursery areas of the North Sea, by combining a larval transport model with an individual-based growth model (Dynamic Energy Budget) to assess the fate from egg to young of the year at the end of the first growth season. Three scenarios of climate change, inspired by the 2040 Intergovernmental Panel on Climate Change projections, are tested and results are compared to a reference situation representative of current climate conditions. Under climate change scenarios where wind changes, water temperature increases and earlier spawning are considered, the early arrival of fish larvae in their nurseries results in larger young of the year at the end of summer. However, early arrival leads to higher mortality due to initially slow growth in spring. Future climate scenarios result in higher biomass and reduced first-year survival. How this result translates into changes at population level and stock management needs further investigation. Nonetheless, this study illustrates that processes linking life stages are paramount to understand and predict possible consequences of future climate conditions on population dynamics.
Located in Library / RBINS Staff Publications 2021
Article Reference Species distribution, hybridization and connectivity in the genus Chionodraco: Unveiling unknown icefish diversity in antarctica
Aim: The species of the genus Chionodraco (Notothenioidei) are the most abundant icefish on the continental shelf of the Weddell Sea. While previous studies indicated that only Chionodraco hamatus and Chionodraco myersi inhabit the Weddell Sea, the third Chionodraco species, Chionodraco rastrospinosus, was recently sampled in the area. As C. rastrospinosus is supposed to be found only at the Antarctic Peninsula and Scotia Arc, this study aimed at confirming the species classification of C. rastrospinosus by molecular methods and identifying its putative source population. Given the documented evidence of introgression among the three species, we tested whether the newly found C. rastrospinosus shared any genetic variability with the other Chionodraco species. To explain the pattern of distribution of the Chionodraco species, we aimed at estimating the hydrodynamic connectivity between the Antarctic Peninsula and the Weddell Sea. Location: Antarctic Peninsula, southern Scotia Arc and the south-eastern Weddell Sea. Methods: We genotyped 19 microsatellites and sequenced the mitochondrial D-loop for 560 Chionodraco individuals. We simulated the dispersal of more than 3 million drifters (Lagrangian model). Results: The molecular analyses support the presence of C. rastrospinosus in the Weddell Sea and its homogeneity with C. rastrospinosus from the Antarctic Peninsula. Bayesian clustering identifies three putative hybrids among C. rastrospinosus and the other congenerics. Lagrangian simulations do not support connectivity driven by the oceanographic features of the Antarctic Peninsula and Weddell Sea via passive larval dispersal only. Main conclusions: This study documents, for the first time, the presence of C. rastrospinosus in the Weddell Sea unveiling more biodiversity than previously known in this region. The sympatry of the three Chionodraco species explains the occurrence of occasional, ongoing events of hybridization in the genus. Alternative possible
Located in Library / RBINS Staff Publications 2021
Article Reference Laohiracia acuta, a new genus and species of Parahiraciini planthopper with elongate cephalic process from Laos (Hemiptera: Fulgoromorpha: Issidae)
Located in Library / RBINS Staff Publications 2021