-
Regional environmental pressure influences population differentiation in turbot (Scophthalmus maximus).
-
Unravelling the factors shaping the genetic structure of mobile marine species is challenging due to the high potential for gene flow. However, genetic inference can be greatly enhanced by increasing the genomic, geographical or environmental resolution of population genetic studies. Here, we investigated the population structure of turbot (Scophthalmus maximus) by screening 17 random and gene-linked markers in 999 individuals at 290 geographical locations throughout the northeast Atlantic Ocean. A seascape genetics approach with the inclusion of high-resolution oceanographical data was used to quantify the association of genetic variation with spatial, temporal and environmental parameters. Neutral loci identified three subgroups: an Atlantic group, a Baltic Sea group and one on the Irish Shelf. The inclusion of loci putatively under selection suggested an additional break in the North Sea, subdividing southern from northern Atlantic individuals. Environmental and spatial seascape variables correlated marginally with neutral genetic variation, but explained significant proportions (respectively, 8.7% and 10.3%) of adaptive genetic variation. Environmental variables associated with outlier allele frequencies included salinity, temperature, bottom shear stress, dissolved oxygen concentration and depth of the pycnocline. Furthermore, levels of explained adaptive genetic variation differed markedly between basins (3% vs. 12% in the North and Baltic Sea, respectively). We suggest that stable environmental selection pressure contributes to relatively strong local adaptation in the Baltic Sea. Our seascape genetic approach using a large number of sampling locations and associated oceanographical data proved useful for the identification of population units as the basis of management decisions.
Located in
Library
/
RBINS Staff Publications
-
Relation between mitochondrial DNA hyperdiversity, mutation rate and mitochondrial genome evolution in Melarhaphe neritoides (Gastropoda: Littorinidae) and other Caenogastropoda
-
Mitochondrial DNA hyperdiversity is primarily caused by high mutation rates (µ) and has potential implications for mitogenome architecture and evolution. In the hyperdiverse mtDNA of Melarhaphe neritoides (Gastropoda: Littorinidae), high mutational pressure generates unusually large amounts of synonymous variation, which is expected to (1) promote changes in synonymous codon usage, (2) reflect selection at synonymous sites, (3) increase mtDNA recombination and gene rearrangement, and (4) be correlated with high mtDNA substitution rates. The mitogenome of M. neritoides was sequenced, compared to closely related littorinids and put in the phylogenetic context of Caenogastropoda, to assess the influence of mtDNA hyperdiversity and high µ on gene content and gene order. Most mitogenome features are in line with the trend in Mollusca, except for the atypical secondary structure of the methionine transfer RNA lacking the TΨC-loop. Therefore, mtDNA hyperdiversity and high µ in M. neritoides do not seem to affect its mitogenome architecture. Synonymous sites are under positive selection, which adds to the growing evidence of non-neutral evolution at synonymous sites. Under such non-neutrality, substitution rate involves neutral and non-neutral substitutions, and high µ is not necessarily associated with high substitution rate, thus explaining that, unlike high µ, a high substitution rate is associated with gene order rearrangement.
Located in
Library
/
RBINS Staff Publications 2018
-
Reliability of AMS 14C dates of moss temper preserved in Neolithic pottery from the Scheldt river valley (Belgium).
-
Located in
Library
/
RBINS Staff Publications 2019
-
Reliable DNA barcoding performance proved for species and island populations of Comoran squamate reptiles
-
Located in
Library
/
RBINS Staff Publications
-
Remains of Atsinganosaurus from the Late Cretaceous Site of Velaux-La Bastide Neuve (Southern France)
-
Located in
Library
/
RBINS Staff Publications 2017
-
Remarks on Hymenoptera on urban green roofs in Belgium
-
In this paper we discuss all Hymenoptera (10.085 specimens) caught on several urban green roofs in Belgium during 2020 and 2021. We thereby try to connect species’ ecology and the specific habitat of extensive green roofs. Based on these findings we suggest what life communities can indeed be expected there. Six species on 120 taxa discovered are first reported for Belgium: Gonatopus lunatus (var. bifasciatus) Klug, 1810 (Aculeata: Dryinidae); Synacra paupera Macek, 1995 (Parasitica: Diapriidae); Alysia lucicola Haliday, 1838, Idiasta dichrocera Konigsmann, 1960 and Leiophron deficiens (Ruthe, 1856) (Parasitica: Braconidae) and Gelis declivis Forster, 1850 (Parasitica: Ichneumonidae).
Located in
Library
/
RBINS Staff Publications 2023 OA
-
Remotely sensed seasonal dynamics of phytoplankton in the Ligurian Sea in 1997-1999.
-
Remotely sensed data and a one-dimensional hydrophysical model were used to study the seasonal dynamics of surface plant pigments concentration in the Ligurian-Provençal basin. The variations of phytoplankton biomass were estimated from the observations of the Coastal Zone Color Scanner (1978–1986) and Sea-viewing Wide Field-of-view Sensor (SeaWiFS) (September 1997 to October 1999) radiometers. The factors of physical environment analyzed included remotely sensed sea surface temperature (from advanced very high resolution radiometers), wind, air temperature, and atmospheric precipitation. The Geohydrodynamics and Environment Research (GHER) model was used to explain the observed correlations between the physical forcing and the response of phytoplankton biomass. The general pattern of phytoplankton seasonal dynamics was typical to subtropical areas: maximum biomass during cold season from October to April and low biomass during summer months. The intensity of winter/spring bloom significantly varied during different years. The correlation was revealed between the summer/autumn air temperature contrast (expressed as the difference between the air temperatures in August and in November) and the maximum monthly averaged surface chlorophyll concentration during the subsequent winter/spring bloom. The features of seasonal dynamics of phytoplankton are regulated by the physical impacts influencing water stratification. The difference between two seasonal cycles (from September 1997 to October 1999) illustrates the response of phytoplankton growth to local meteorological conditions. In March–April 1999 the vernal bloom was much more pronounced; it resulted from deeper winter cooling and more intensive winter convection. Heating of surface water layer, wind mixing, and freshwater load with rains and river discharge either stimulate or depress the development of phytoplankton, depending on what limiting environmental factor (light or nutrient limitation) prevailed.
Located in
Library
/
No RBINS Staff publications
-
Repeated unidirectional introgression of nuclear and mitochondrial DNA between four congeneric Tanganyikan cichlids.
-
With an increasing number of reported cases of hybridization and introgression, interspecific gene flow between animals has recently become a widely accepted and broadly studied phenomenon. In this study, we examine patterns of hybridization and introgression in Ophthalmotilapia spp., a genus of cichlid fish from Lake Tanganyika, using mitochondrial and nuclear DNA from all four species in the genus and including specimens from over 800 km of shoreline. These four species have very different, partially overlapping distribution ranges, thus allowing us to study in detail patterns of gene flow between sympatric and allopatric populations of the different species. We show that a significant proportion of individuals of the lake-wide distributed O. nasuta carry mitochondrial and/or nuclear DNA typical of other Ophthalmotilapia species. Strikingly, all such individuals were found in populations living in sympatry with each of the other Ophthalmotilapia species, strongly suggesting that this pattern originated by repeated and independent episodes of genetic exchange in different parts of the lake, with unidirectional introgression occurring into O. nasuta. Our analysis rejects the hypotheses that unidirectional introgression is caused by natural selection favoring heterospecific DNA, by skewed abundances of Ophthalmotilapia species or by hybridization events occurring during a putative spatial expansion in O. nasuta. Instead, cytonuclear incompatibilities or asymmetric behavioral reproductive isolation seem to have driven repeated, unidirectional introgression of nuclear and mitochondrial DNA into O. nasuta in different parts of the lake.
Located in
Library
/
RBINS Staff Publications
-
Reply to “Comment on “Ecological niche of Neanderthals from Spy Cave revealed by nitrogen isotopes of individual amino acids in collagen.” [J. Hum. Evol. 93 (2016) 82–90]” [J. Hum. Evol. 117 (2018) 53–55]
-
Located in
Library
/
RBINS Staff Publications 2018
-
Reply to comment by Kienle et al. 2017
-
Located in
Library
/
RBINS Staff Publications 2017
