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Inproceedings Reference Phylogenetic position of Olbitherium (Mammalia, Perissodactyla) based on new material from the early Eocene Wutu Formation
The genus Olbitherium was originally described in 2004 from the early Eocene of the Wutu Formation in China as a ‘perissodactyl-like’ archaic ungulate. Described material of Olbitherium consists of partial dentaries with lower cheek teeth, isolated upper molars, and an isolated upper premolar. Subsequent collaborative fieldwork by Belgian and Chinese researchers discovered new material including a partial skull, the anterior portion of the dentary, and associated postcrania. In their general form, the skull and postcrania are similar to those of early perissodactyls. The new material provides a more complete picture of the upper dentition, and the anterior dentary demonstrates the presence of three lower incisors and a large canine, both ancestral features for perissodactyls. A phylogenetic analysis was conducted to test the affinities of Olbitherium, using a matrix of 321 characters and 72 taxa of placental mammals emphasizing perissodactyls and other ungulates. The results produced four shortest trees of 1981 steps. In all four trees, Olbitherium is the sister-taxon to all perissodactyls except Ghazijhippus. In contrast, when scoring was restricted to the originally described material, the results produced 16 shortest trees of 1970 steps, and Olbitherium nests well within Perissodactyla as sister-taxon to a clade including Lambdotherium and the brontotheriids Eotitanops and Palaeosyops. The new material not only supports the identification of Olbitherium as a perissodactyl, but it also suggests that it is significant for understanding the ancestral perissodactyl morphotype. Funding Sources U.S. National Science Foundation (DEB1456826), Chinese Ministry of Science and Technology (2009DFA32210), and Belgian Science Policy Office (BL/36/C54).
Located in Library / RBINS Staff Publications 2020
Article Reference Phylogenetic relationships of Gomphocythere (Crustacea, Ostracoda) in Lake Tanganyika, East Africa
Located in Library / RBINS Staff Publications
Article Reference Phylogenomic Characterization of Lopma Virus and Praja Virus, Two Novel Rodent-Borne Arteriviruses
Located in Library / RBINS Staff Publications 2021 OA
Article Reference Phylogenomics and biogeography of sawflies and woodwasps (Hymenoptera, Symphyta)
Located in Library / RBINS Staff Publications 2024
Article Reference Phylogenomics of African radiation of Praomyini (Muridae: Murinae) rodents: first fully resolved phylogeny, evolutionary history and delimitation of extant genera
Located in Library / RBINS Staff Publications 2021
Article Reference Phylogenomics of Psammodynastes and Buhoma (Elapoidea: Serpentes), with the description of a new Asian snake family
Asian mock vipers of the genus Psammodynastes and African forest snakes of the genus Buhoma are two genera belonging to the snake superfamily Elapoidea. The phylogenetic placements of Psammodynastes and Buhoma within Elapoidea has been extremely unstable which has resulted in their uncertain and debated taxonomy. We used ultraconserved elements and traditional nuclear and mitochondrial markers to infer the phylogenetic relationships of these two genera with other elapoids. Psammodynastes, for which a reference genome has been sequenced, were found, with strong branch support, to be a relatively early diverging split within Elapoidea that is sister to a clade consisting of Elapidae, Micrelapidae and Lamprophiidae. Hence, we allocate Psammodynastes to its own family, Psammodynastidae new family. However, the phylogenetic position of Buhoma could not be resolved with a high degree of confidence. Attempts to identify the possible sources of conflict in the rapid radiation of elapoid snakes suggest that both hybridisation/introgression during the rapid diversification, including possible ghost introgression, as well as incomplete lineage sorting likely have had a confounding role. The usual practice of combining mitochondrial loci with nuclear genomic data appears to mislead phylogeny reconstructions in rapid radiation scenarios, especially in the absence of genome scale data.
Located in Library / RBINS Staff Publications 2024
Article Reference Phylogeny and phylogeography of Altolamprologus: ancient introgression and recent divergence in a rock-dwelling Lake Tanganyika cichlid genus
Located in Library / RBINS Staff Publications 2016
Article Reference Phylogeny, diversity, and species delimitation of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology
Located in Library / RBINS Staff Publications
Incollection Reference Phylogeogeraphic patterns in populations of cichlid fishes from rock habitats in Lake Tanganyika
Located in Library / RBINS Staff Publications
Article Reference Phylogeography and evolutionary history of the Crocidura olivieri complex (Mammalia, Soricomorpha): from a forest-based origin to a broad expansion across Africa
Background: This study aims to reconstruct the evolutionary history of African shrews referred to the Crocidura olivieri complex. We tested the respective role of forest retraction/expansion during the Pleistocene, rivers (allopatric models), ecological gradients (parapatric model) and anthropogenic factors in explaining the distribution and diversification within this species complex. We sequenced three mitochondrial and four nuclear markers from 565 specimens encompassing the known distribution of the complex, i.e. from Morocco to Egypt and south to Mozambique. We used Bayesian phylogenetic inference, genetic structure analyses and divergence time estimates to assess the phylogenetic relationships and evolutionary history of these animals. Results: The C. olivieri complex (currently composed of C. olivieri, C. fulvastra, C. viaria and C. goliath) can be segregated into eight principal geographical clades, most exhibiting parapatric distributions. A decrease in genetic diversity was observed between central and western African clades and a marked signal of population expansion was detected for a broadly distributed clade occurring across central and eastern Africa and portions of Egypt (clade IV). The main cladogenesis events occurred within the complex between 1.37 and 0.48 Ma. Crocidura olivieri sensu stricto appears polyphyletic and C. viaria and C. fulvastra were not found to be monophyletic. Conclusions: Climatic oscillations over the Pleistocene probably played a major role in shaping the genetic diversity within this species complex. Different factors can explain their diversification, including Pleistocene forest refuges, riverine barriers and differentiation along environmental gradients. The earliest postulated members of the complex originated in central/eastern Africa and the first radiations took place in rain forests of the Congo Basin. A dramatic shift in the ecological requirements in early members of the complex, in association with changing environments, took place sometime after 1.13 Ma. Some lineages then colonized a substantial portion of the African continent, including a variety of savannah and forest habitats. The low genetic divergence of certain populations, some in isolated localities, can be explained by their synanthropic habits. This study underlines the need to revise the taxonomy of the C. olivieri complex.
Located in Library / RBINS Staff Publications