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Ergasilid copepods in Africa: first application of next-generation sequencing and update on distribution and phylogenetic position of Ergasilus kandti, a parasite of cichlid fishes
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Ergasilidae are a family of globally distributed copepods parasitizing freshwater fishes. Despite their widespread occurrence, their phylogeographic patterns are poorly understood, specifically in the African Great Lakes. Here, we aim to provide an update on distribution of Ergasilus kandti, a copepod species infecting Tylochromis polylepis, an endemic cichlid fish species in Lake Tanganyika, and the phylogenetic relationship of African ergasilids. We present the first record of E. kandti parasitizing the gills of T. polylepis in Lake Tanganyika proper, identified through light microscopy and, for the first time for any ergasilid, confocal laser scanning microscopy. We suggest that this technique adds spatial context to characters and are hardly visible while using light microscopy. Phylogenetic analyses based on ribosomal DNA fragments suggest two monophyletic groups of African ergasilids. However, the phylogenetic relationships of Ergasilus remain unresolved, possibly because of the insufficient resolution of these widely used phylogenetic markers and low taxonomic coverage. A comparison of ergasilid mitochondrial genomes highlights traits found in other parasite lineages including genome shrinkage and low evolutionary rates of the cox1 gene. This study presents the most extensive molecular characterization of any ergasilid species to date.
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RBINS Staff Publications 2024
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Recent non-marine ostracods (Crustacea) from New Caledonia (Melanesia, Pacific Ocean)
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The New Caledonian Archipelago is a hot spot for biodiversity and endemism. Here, we report on new records of nine species from localities on the main island, Grande Terre, and illustrate these: Ilyodromus viridulus (Brady, 1886), Stenocypris hislopi Ferguson, 1969, S. macedonica Petkovski & Meisch, 1996¸ S. malayica Victor & Fernando, 1981, Bradleytriebella lineata (Victor & Fernando, 1981), Hemicypris pyxidata (Moniez, 1892), Heterocypris incongruens (Ramdohr, 1808), Cypridopis vidua (O.F. Müller, 1776) and Limnocythere stationis Vávra, 1891. We also provide redescriptions and illustrations of the valves and carapace of Stenocypris marginata Daday, 1910 sensu Méhes, 1939, Cypris granulata Daday, 1898 and Kennethia major (Méhes, 1939); for the latter species also including some soft parts. Therefore, twenty two certain species have thus far been reported from the New Caledonian Archipelago. The status of seven uncertain species is also discussed. Previous records of Stenocypris major (Baird, 1859) from Grande Terre, mainly by Méhes, are here considered to belong to S. hislopi. We propose to reject the presence of Cyprinotus cingalensis Brady, 1886 in New Caledonia and suggest to consider Cypridopsis sarasini Méhes, 1939 as an “uncertain species” (sensu Meisch et al. 2019). We also argue that Eucypris wolffhuegeli Méhes, 1914 might be a synonym of H. incongruens and suggest that Strandesia rouxi Méhes, 1939 might be considered a junior synonym of an existing species, pending further research.
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RBINS Staff Publications 2024
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High water temperature significantly influences swimming performance of New Zealand migratory species
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Anthropogenic structures in freshwater systems pose a significant threat by fragmenting habitats. Effective fish passage solutions must consider how environmental changes introduce variability into swimming performance. As temperature is considered the most important external factor influencing fish physiology, it is especially important to consider its effects on fish swimming performance. Even minor alterations in water properties, such as temperature and velocity, can profoundly affect fish metabolic demands, foraging behaviours, fitness and, consequently, swimming performance and passage success. In this study, we investigated the impact of varying water temperatures on the critical swimming speeds of four migratory New Zealand species. Our findings revealed a significant reduction in critical swimming speeds at higher water temperatures (26°C) compared to lower ones (8 and 15°C) for three out of four species (Galaxias maculatus, Galaxias brevipinnis and Gobiomorphus cotidianus). In contrast, Galaxias fasciatus exhibited no significant temperature-related changes in swimming performance, suggesting species-specific responses to temperature. The cold temperature treatment did not impact swimming performance for any of the studied species. As high water temperatures significantly reduce fish swimming performance, it is important to ensure that fish passage solutions are designed to accommodate a range of temperature changes, including spatial and temporal changes, ranging from diel to decadal fluctuations. Our research underscores the importance of incorporating temperature effects into fish passage models for habitat restoration, connectivity initiatives, and freshwater fish conservation. The influence of temperature on fish swimming performance can alter migration patterns and population dynamics, highlighting the need for adaptive conservation strategies. To ensure the resilience of freshwater ecosystems it is important to account for the impact of temperature on fish swimming performance, particularly in the context of a changing climate.
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RBINS Staff Publications 2024
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A Paleocene occurrence of cornelian cherries Cornus subg. Cornus in the land-mammal site of Berru (Paris Basin, France)
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Cornus subgenus Cornus, also called cornelian cherries, is a relatively ancient clade of dogwoods with a complex biogeographic history. Their fossil record attests to a distribution in North America during the Late Cretaceous and Paleocene, whereas the earliest fossil record in Europe is dated as early as the Eocene. Here, we describe a new occurrence of cornelian cherries based on permineralized endocarps from the late Paleocene (ca. 58 Ma) land-mammal locality of Berru, in Northwest France. The 48 studied specimens possess characteristic cornelian cherry endocarp morphology with locules associated with a dorsal germination valve, no central vascularization, and the presence of numerous secretory cavities in the endocarp wall. In addition, the presence of (three)-four locules and a large apical depression strongly suggest affinities with the early Eocene species Cornus multilocularis from the London Clay Formation. This new occurrence expands the stratigraphic range of the species by approximately four to six million years and is the first unequivocal evidence of cornelian cherries in Europe during the Paleocene. The biogeographical history of cornelian cherries remains complex to explore because of its ancient distribution in the Cretaceous and a geographically and stratigraphically patchy Cenozoic record.
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RBINS Staff Publications 2025
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A Neogene succession in the city centre of Antwerp (Belgium): stratigraphy, palaeontology and geotechnics of the Rubenshuis temporary outcrop
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A temporary outcrop near the “Rubenshuis” in the centre of Antwerp (northern Belgium) facilitated the study of the Neogene glauconitic sand of the Berchem and Kattendijk formations, west and south of their respective stratotype sections. In contrast to the latter sections, the exposed Kiel Member of the Berchem Formation contains a relatively silty interval in its upper part, which is also reflected in Cone Penetration Tests. This silty interval is rich in molluscs, including the subspecies Glossus lunulatus cf. lunulatus and Ennucula haesendoncki haesendoncki, previously unknown from this member. Dinoflagellate cysts indicate that the main body of the Kiel Member was deposited during the middle Burdigalian, while only the upper part was deposited during the late Burdigalian. The Kiel Member is covered by the shell-rich, silty sand of the Langhian Antwerpen Member (Berchem Formation). Both members display soft-sediment deformation structures, probably caused by differences in silt content between and within these units. The Antwerpen Member is incised by the Lower Pliocene Kattendijk Formation, which reduced the thickness of the former to only 1.1 m, compared to 7 m in northeastern Antwerp. As a result, the basal gravel of the Kattendijk Formation contains many fossils reworked from the Antwerpen Member, in addition to autochthonous molluscs and Ditrupa. The Zanclean fauna resembles associations known from the highest part of the Kattendijk Formation in the former Oosterweel outcrop north of Antwerp, while it differs from the fauna of the lowermost Kattendijk Formation near Doel and Kallo. Hence, the palaeontological observations corroborate the regional depositional model of this unit, suggesting that only the youngest gully sequence of the Kattendijk Formation was deposited across the city of Antwerp.
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RBINS Staff Publications 2024 OA
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Dispersal model alert on the risks of alien species introduction by ballast waters in protected areas from the Western Antarctic Peninsula
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Aim The Western Antarctic Peninsula is challenged by climate change and increasing maritime traffic that together facilitate the introduction of marine non-native species from warmer regions neighbouring the Southern Ocean. Ballast water exchange has been frequently reported as an introduction vector. This study uses a Lagrangian approach to model the passive drift of virtual propagules departing from Ballast water hypothetic exchange zones, at contrasting distances from the coasts. Location Western Antarctic Peninsula. Methods Virtual propagules were released over the 2008–2016 period and at three distances from the nearest coasts: 200 (convention for the management of Ballast Water, 2004), 50 or 11 nautical miles (NM). Results Results show that exchanging Ballast water at 200 NM considerably reduces the arrival of propagules in proposed marine protected areas of the western side of the Antarctic Peninsula. On the eastern side, propagules can reach north-eastern marine protected areas within a few days due to strong currents for all tested scenarios. Seasonal and yearly variations indicate that exceptional climate events could influence the trajectory of particles in the region. Ballast water should be exchanged at least 200 NM offshore on the western side of the Antarctic Peninsula and avoided on the eastern side to limit particle arrival in proposed marine protected areas. Focusing on Deception Island, our results suggested that the Patagonian crab (Halicarcinus planatus) observed in 2010 could have been introduced in case of Ballast water exchange at 50 NM or less from the coast. Main conclusions This study highlights the importance of respecting Ballast water exchange convention to limit the risk of non-native species introduction. Ballast water exchange should be operated at least at 200 NM from the coasts, which further limits particle arrival in shallow water areas. This is especially important in the context of a more visited and warmer Southern Ocean.
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RBINS Staff Publications 2022
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Describing novel mitochondrial genomes of Antarctic amphipods
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To date, only one mitogenome from an Antarctic amphipod has been published. Here, novel complete mitochondrial genomes (mitogenomes) of two morphospecies are assembled, namely, Charcotia amundseni and Eusirus giganteus. For the latter species, we have assembled two mitogenomes from different genetic clades of this species. The lengths of Eusirus and Charcotia mitogenomes range from 15,534 to 15,619 base pairs and their mitogenomes are composed of 13 protein coding genes, 22 transfer RNAs, 2 ribosomal RNAs, and 1 putative control region CR. Some tRNAs display aberrant structures suggesting that minimalization is also ongoing in amphipod mitogenomes. The novel mitogenomes of the two Antarctic species have features distinguishing them from other amphipod mitogenomes such as a lower AT-richness in the whole mitogenomes and a negative GC- skew in both strands of protein coding genes. The genetically most variable mitochondrial regions of amphipods are nad6 and atp8, while cox1 shows low nucleotide diversity among closely and more distantly related species. In comparison to the pancrustacean mitochondrial ground pattern, E. giganteus shows a translocation of the nad1 gene, while cytb and nad6 genes are translocated in C. amundseni. Phylogenetic analysis based on mitogenomes illustrates that Eusirus and Charcotia cluster together with other species belonging to the same amphipod superfamilies. In the absence of reference nuclear genomes, mitogenomes can be useful to develop markers for studying population genetics or evolutionary relationships at higher taxonomic levels.
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On an endemic species flock of cypridopsine ostracods (Crustacea, Ostracoda) from the ancient Lake Malawi (Africa), with the description of a new genus and three new species
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We describe Malawidopsis gen. nov., a new genus of Cypridopsinae Kaufmann, 1900 from the African ancient Lake Malawi. The genus comprises at least 17 new species, which makes it a significant ostracod radiation in this lake, parallel to a similar (but independent) cypridopsine radiation in Lake Tanganyika. Three of these new species are here described: Malawidopsis stellae gen. et. sp. nov., the type species of the new genus; M. ruwaydae gen. et. sp. nov. and M. antoniae gen. et. sp. nov.. The other new species are briefly illustrated and described, but are left in open nomenclature (sp. A, B, C, etc.). Cypridopsis cunningtoni Sars, 1910 and Potamocypris fuelleborni Daday, 1910 are transferred to Malawidopsis gen. nov. and are identical to Malawidopsis spec. F and Malawidopsis spec. N, respectively. The new tribe Plesiocyprisopsini trib. nov. is erected, and comprises the cypridopsine genera previously in the Cypridopsini s.l. with the right valve overlapping the left valve, at least anteriorly. Potential drivers of speciation within this endemic clade in Lake Malawi are briefly discussed. Bathymetry might have been important, with most species being restricted to shallower depths and only four species also occurring at depths of 75 m or more, but very few specimens were retrieved from greater depths. Most species occurred on coarse sand, but this sediment category coincides with shallower stations. Overall, most species appear to have a wide geographical distribution in the lake, so no geographical parapatric speciation is apparent. The occurrence of all species in sexual populations and the significant differences in the male sexual organs and the valves suggest that sexual selection might have been the most important driver in the speciation process of this species flock, but this should be further explored. Following deep coring results in Lake Malawi, the present clade could be (at least) c one million years old.
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On a new species of Pseudocypretta Klie, 1932 (Crustacea, Ostracoda) from the Neotropical region, with a discussion on the position of the genus.
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Pseudocypretta amor sp. nov. (named after the carapace spots resembling the word “Love”) is here described from all-female populations from the four major floodplains in Brazil. The new species is compared to the other two know species in the genus, P. maculata Klie (1932), the type species, and P. lineata Ma and Yu (2020). As the latter two species are thus far found exclusively in South East Asia and China, respectively, the present extension of the area of the genus to South America is considerable. Several morphological characters in this genus and species are discussed, especially the presence of marginal septa in the valves, the candonid type T3 with 3rd and 4th segment separated (candonid type) and the caudal ramus which is reduced to a flagellum (cypridopsine type) or is fully absent. Based on the combination of these and other characters, the genus Pseudocypretta is here transferred from the Cyprettinae to the tribe Cyprettadopsini in the Cypridopsinae, as it is closely related to the genus Cyprettadopsis Savatenalinton, 2020. The presence of the candonid type T3 in Cyprididae and Notodromadidae, where the T3 generally has a pincer-shaped tip by the fusion of the 3rd and the 4th segment, is further discussed.
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RBINS Staff Publications 2022
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A comparison of three main scientific literature databases using a search in aquatic ecology
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Online searches for relevant scientific references using keywords have become common practice. Several multidisciplinary scientific online databases are available, of which Web of Science, Scopus (both payable) and Google Scholar (free of charge) are the most commonly used. We test the hypothesis that results of highly similar searches in these three databases do not necessarily give comparable results. We set out to query the three databases with a real example on “diapause in microcrustaceans” (Cladocera, Copepoda and Ostracoda), using the same time period (2012–2021), the same keywords with the same syntaxis and the same sorting criterion (“relevance”), and compared the first 100 hits provided by each database. There were several references provided which were irrelevant to the search, especially in the Web of Science, and of the remaining relevant references, only 9.84% were provided by all three databases. Our survey showed significant differences amongst the results provided by the databases, especially for “hydroperiod” and “type of environment”. These differences can be the result of different coverage of the scientific literature by the databases, but also of the different ways by which the criterion “relevance” is calculated by the three algorithms. We, therefore, recommend that literature surveys must be based on several databases; otherwise, the results might become biased.
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RBINS Staff Publications 2022
