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Mitogenomic characterization and systematic placement of the Congo blind barb Caecobarbus geertsii (Cypriniformes: Cyprinidae)
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This study presents the first complete mitochondrial genome (mitogenome) of Caecobarbus geertsii, the Congo blind barb, a cave-dwelling, CITES-protected, cyprinid fish endemic to the Lower Congo basin (DRC). The length of the circular mitogenome is 16,565 base pairs. The 13 protein coding genes, 2 ribosomal RNA genes and 22 transfer RNA genes are similar in position and direction to those of other members of the family Cyprinidae. Phylogenetic analyses including 28 complete mitogenomes from representatives of the subfamily Smiliogastrinae (Cyprinidae), showed that Caecobarbus was nested within a clade including representatives of the genus Enteromius. The data presented in this study provide information on the molecular identification and classification of this threatened species. The results further suggest the need for a taxonomic revision of the genus Enteromius.
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RBINS Staff Publications 2020
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Mitogenomics reveals high synteny and long evolutionary histories of sympatric cryptic nematode species
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Species with seemingly identical morphology but with distinct genetic differences are abundant in the marine environment and frequently co-occur in the same habitat. Such cryptic species are typically delineated using a limited number of mitochondrial and/or nuclear marker genes, which do not yield information on gene order and gene content of the genomes under consideration. We used next-generation sequencing to study the composition of the mitochondrial genomes of four sympatrically distributed cryptic species of the Litoditis marina species complex (PmI, PmII, PmIII, and PmIV). The ecology, biology, and natural occurrence of these four species are well known, but the evolutionary processes behind this cryptic speciation remain largely unknown. The gene order of the mitochondrial genomes of the four species was conserved, but differences in genome length, gene length, and codon usage were observed. The atp8 gene was lacking in all four species. Phylogenetic analyses confirm that PmI and PmIV are sister species and that PmIII diverged earliest. The most recent common ancestor of the four cryptic species was estimated to have diverged 16 MYA. Synonymous mutations outnumbered nonsynonymous changes in all protein-encoding genes, with the Complex IV genes (coxI-III) experiencing the strongest purifying selection. Our mitogenomic results show that morphologically similar species can have long evolutionary histories and that PmIII has several differences in genetic makeup compared to the three other species, which may explain why it is better adapted to higher temperatures than the other species.
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RBINS Staff Publications 2016
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Mixed breeding system in the hermaphroditic land slug Arion intermedius (Stylommatophora, Arionidae)
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RBINS Staff Publications
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Mixed hydrothermal and meteoric fluids evidenced by unusual H- and O-isotope compositions of kaolinite-halloysite in the Fe(-Mn) Tamra deposit (Nefza district, NW Tunisia)
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RBINS Staff Publications 2018
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Mixing of magmatic-hydrothermal and metamorphic fluids and the origin of peribatholitic Sn vein-type deposits in Rwanda
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The fluid sources of granite-related Sn-quartz vein deposits are commonly obscured by fluid mixing or fluid-rock interactions. As a result, fluid inclusions, minerals and isotopes in these veins indicate an intermediate composition between magmatic and metamorphic, but the degree of mixing between these endmembers is currently unquantified. This study presents a novel quantitative approach to assess the degree of mixing between magmatic-hydrothermal and external metamorphic fluids in the formation of peribatholitic Sn-quartz veins. In particular, fluid mixing in the Sn-mineralized Rwamagana-Musha-Ntunga pegmatite-quartz vein field in East Rwanda has been evaluated by the following four methods: quartz stable isotopes, muscovite geochemistry, fluid inclusion microthermometry and LA-ICP-MS, and geochemical modelling. The quartz stable isotope data (δ18O: +13.1 to +15.8‰ V-SMOW; δD: −27.6 to −59.7‰ V-SMOW) cannot uniquely differentiate between a metamorphic fluid origin or an initial magmatic hydrothermal fluid origin with subsequent metamorphic fluid mixing or host-rock interaction. However, granitophile element concentrations in magmatic muscovite from pegmatites and hydrothermal muscovite from associated Sn-quartz veins are equally high, indicating a close genetic link (Rb: 530–8740 ppm, Li: 110–1990 ppm, Sn: 87–810 ppm, Cs: 62–420 ppm). Primary H2O-CO2-N2-NaCl medium saline magmatic fluid inclusions in quartz of pegmatites (∼12.7 wt% NaCleq) and H2O-CO2-(N2)-NaCl low saline fluid inclusions in barren metamorphic quartz veins (∼4.9 wt% NaCleq) were analyzed by LA-ICP-MS. These results show an enrichment in Li, Rb, Sn and Cs for the magmatic fluid, while the metamorphic fluid is characterized by low granitophile element concentrations and high Sr and Ba contents. The expected Rb-Cs and Rb-Sn signature of the Sn-quartz vein muscovite was modelled using the measured fluid endmember compositions, confirming mixing between magmatic and metamorphic fluids in the formation of the veins. The quantification suggests that the hydrothermal Sn-quartz vein fluid contains 5–80% of an external metamorphic fluid component.
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RBINS Staff Publications 2018
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Mn oxides as efficient traps for metal pollutants in a polyphase low-temperature Pliocene environment: A case study in the Tamra iron mine, Nefza mining district, Tunisia
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No RBINS Staff publications
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Mobility and origin of camels in the Roman Empire through serial stable carbon and oxygen isotopes variations in tooth enamel
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Although camels are not indigenous to Europe, they have been found at several sites from several Roman provinces dating from the beginning of the 1st century AD onwards. It must have been beneficial to bring them there. Based on finds of remains from juvenile individuals (e.g. from Tanais), it has been suggested that the Romans might have systematically bred camels within Europe. For this study, we took serial samples of the enamel of four camels from European sites (Innsbruck-Wilten, Mamer-Bertrange, Tongeren, and Trier) dating to the 2nd - 4th century AD. We measured the relative abundances of carbon and oxygen isotopes of the carbonate fraction from the tooth enamel. The continuous record of oxygen and carbon isotopic composition of the intra-tooth enamel serial samples reflects the climate and habitat in which an individual lived during the time of tooth mineralization. We used these data to make a rough evaluation of the areas of origin consistent with the relative abundances of the isotopes from the enamel of the camels and attempt to reconstruct their life history and mobility behavior based on the different ecological characteristics of the habitats represented in the isotopic data. Furthermore, the data can function as an additional proxy for species determination, due to the different habitats of Camelus bactrianus and Camelus dromedarius. This work also yields interesting insights on the similarities in the mobility pattern of the camels from Mamer-Bertrange and Trier. In combination with archaeological evidence, it was possible to tentatively connect them with specific military units, i.e. the detachments of the Legio VIII Augusta.
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RBINS Staff Publications 2020
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Mobility of Scandinavian goods in the Middle Ages and modern period: identification of Norwegian whetstones in northern France and Belgium.
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RBINS Staff Publications 2024
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Model of remote-sensing reflectance including bidirectional effects for case 1 and case 2 waters
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RBINS Staff Publications
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Modeling storm-influenced suspended particulate matter flocculation usin g a tide-wave-combined biomineral model
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RBINS Staff Publications 2018
