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Article Reference A Middle to late Holocene avulsion history of the Euphrates river: a case study from Tell ed-Der, Iraq, Lower Mesopotamia.
Located in Library / RBINS Staff Publications
Article Reference A Million Years of Mammoth Mitogenome Evolution.
The genomic study of specimens dating to the Early and Middle Pleistocene (EP and MP), a period spanning from 2.6 million years ago (Ma) to 126 thousand years ago (ka), has the potential to elucidate the evolutionary processes that shaped present-day biodiversity. Obtaining genomic data from this period is challenging, but mitochondrial DNA, given its higher abundance compared to nuclear DNA, could play an important role to understand evolutionary processes at this time scale. In this study, we report 34 new mitogenomes, including two EP and nine MP mammoth (Mammuthus spp.) specimens from Siberia and North America and analyze them jointly with >200 publicly available mitogenomes to reconstruct a transect of mammoth mitogenome diversity throughout the last million years. We find that our EP mitogenomes fall outside the diversity of all Late Pleistocene (LP) mammoths, while those derived from MP mammoths are basal to LP mammoth Clades 2 and 3, supporting an ancient Siberian origin of these lineages. In contrast, the geographical origin of Clade 1 remains unresolved. With these new deep-time mitogenomes, we observe diversification events across all clades that appear consistent with previously hypothesized MP and LP demographic changes. Furthermore, we improve upon an existing methodology for molecular clock dating of specimens >50 ka, demonstrating that specimens need to be individually dated to avoid biases in their age estimates. Both the molecular and analytical improvements presented here highlight the importance of deep-time genomic data to discover long-lost genetic diversity, enabling better assessments of evolutionary histories.
Located in Library / RBINS Staff Publications 2025
Article Reference A Miocene pygmy right whale fossil from Australia
Located in Library / RBINS Staff Publications 2018
Article Reference A Miocene relative of the Ganges River dolphin (Odontoceti, Platanistidae) from the Amazonian Basin
Located in Library / RBINS Staff Publications
Article Reference A Miocene Ziphiid (Cetacea: Odontoceti) from Calvert Cliffs, Maryland, U.S.A.
Located in Library / RBINS Staff Publications
Article Reference A mitochondrial phylogeographic scenario for the most widespread African rodent species , Mastomys natalensis
In order to evaluate the contribution of geological, environmental, and climatic changes to the spatial distri- bution of genetic variation of Mastomys natalensis, we analysed cytochrome b sequences from the whole dis- tribution area of the species to infer its phylogeographic structure and historical demography. Six well-supported phylogroups, differentiated during the Pleistocene, were evidenced. No significant correlation between genetic and geographic distances was found at the continental scale, and the geographic distributions of the observed phylogroups have resulted from extensive periods of isolation caused by the presence of putative geographic and ecological barriers. The diversification events were probably influenced by habitat contraction/expansion cycles that may have complemented topographic barriers to induce genetic drift and lineage sorting. According to our results, we propose a scenario where climate-driven processes may have played a primary role in the differ- entiation among phylogroups.
Located in Library / RBINS Staff Publications
Article Reference A model study of the Rhine discharge front and downwelling circulation
Located in Library / RBINS Staff Publications
Article Reference A moderate differential effect of organic and conventional agriculture across taxonomic groups inhabiting farmland ponds
1. Organic agriculture is increasingly promoted as a more environmentally friendly alternative to conventional agriculture, as it restricts the use of fertilisers and synthetic pesticides. However, the impact of both farming systems on aquatic biodiversity is strongly debated. Ponds are abundant in agricultural landscapes and strongly contribute to biodiversity. They also respond strongly to land use on a very local scale. The present study assessed the effects of conventional and organic agriculture on the taxonomic diversity of multiple groups of aquatic organisms at local and regional spatial scales. 2. We conducted a broad scale field survey to quantify the differential impact of conventional and organic agriculture on local environmental conditions in ponds, on community composition and on local, among site and regional diversity of macrophytes, cladoceran zooplankton and selected macroinvertebrates in Belgian farmland ponds (Flanders). 3. We observed that organic agriculture was moderately positively associated with higher local species richness for shoreline vegetation, but not for other organism groups. Only minor differences were observed for among-pond variation, and these were mostly related to rare species of cladocerans and heteropterans. At the regional scale, ponds in organic showed higher species richness than in conventional farmland for shoreline vegetation, emergent vegetation, and cladoceran zooplankton, but lower for coleopterans and gastropods. There was no significant effect of agricultural type on water quality. 4. We conclude that organic farming is associated with moderate positive effects on pond biodiversity and regional species richness of plants and zooplankton. We observed no systematic differences between the two types of agriculture in local environmental conditions in ponds. The absence of large differences in biodiversity and water quality between ponds located in organic and conventional farmland might be related to the dominance of intensive conventional farming in our study region and the history of conventional farming around ponds that are now surrounded by organic farming. Future studies should include other factors such as the structure of the landscape and the role of natural elements such as buffer strips surrounding the ponds.
Located in Library / RBINS Staff Publications 2023
Article Reference A molecular diagnostic for identifying central African forest artiodactyls from faecal pellets
Located in Library / RBINS Staff Publications
Article Reference A molecular phylogenetic framework for the Ergalataxinae (Neogastropoda: Muricidae)
Located in Library / RBINS Staff Publications