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Article Reference Field Data on the Little Known and, Endangered Lepilemur Mittermeieri
Located in Library / RBINS Staff Publications
Article Reference Field Intercomparison of Radiometer Measurements for Ocean Colour Validation
A field intercomparison was conducted at the Acqua Alta Oceanographic Tower (AAOT) in the northern Adriatic Sea, from 9 to 19 July 2018 to assess differences in the accuracy of in- and above-water radiometer measurements used for the validation of ocean colour products. Ten measurement systems were compared. Prior to the intercomparison, the absolute radiometric calibration of all sensors was carried out using the same standards and methods at the same reference laboratory. Measurements were performed under clear sky conditions, relatively low sun zenith angles, moderately low sea state and on the same deployment platform and frame (except in-water systems). The weighted average of five above-water measurements was used as baseline reference for comparisons. For downwelling irradiance ( E d ), there was generally good agreement between sensors with differences of <6\% for most of the sensors over the spectral range 400 nm–665 nm. One sensor exhibited a systematic bias, of up to 11\%, due to poor cosine response. For sky radiance ( L s k y ) the spectrally averaged difference between optical systems was <2.5\% with a root mean square error (RMS) <0.01 mWm−2 nm−1 sr−1. For total above-water upwelling radiance ( L t ), the difference was <3.5\% with an RMS <0.009 mWm−2 nm−1 sr−1. For remote-sensing reflectance ( R r s ), the differences between above-water TriOS RAMSES were <3.5\% and <2.5\% at 443 and 560 nm, respectively, and were <7.5\% for some systems at 665 nm. Seabird-Hyperspectral Surface Acquisition System (HyperSAS) sensors were on average within 3.5\% at 443 nm, 1\% at 560 nm, and 3\% at 665 nm. The differences between the weighted mean of the above-water and in-water systems was <15.8\% across visible bands. A sensitivity analysis showed that E d accounted for the largest fraction of the variance in R r s , which suggests that minimizing the errors arising from this measurement is the most important variable in reducing the inter-group differences in R r s . The differences may also be due, in part, to using five of the above-water systems as a reference. To avoid this, in situ normalized water-leaving radiance ( L w n ) was therefore compared to AERONET-OC SeaPRiSM L w n as an alternative reference measurement. For the TriOS-RAMSES and Seabird-HyperSAS sensors the differences were similar across the visible spectra with 4.7\% and 4.9\%, respectively. The difference between SeaPRiSM L w n and two in-water systems at blue, green and red bands was 11.8\%. This was partly due to temporal and spatial differences in sampling between the in-water and above-water systems and possibly due to uncertainties in instrument self-shading for one of the in-water measurements.
Located in Library / RBINS Staff Publications 2020
Article Reference Fifteen microsatellite loci for the decollate snail, Rumina decollata.
We characterized 15 microsatellite loci from the decollate snail, Rumina decollata. Loci were screened in 21 individuals and several individuals of the congener Rumina saharica. There was ample allelic diversity (6–12 alleles per locus) but observed heterozygosity values were extremely low (0–0.421). This was expected given the high self-fertilization rate in this species. Ten of the 15 loci were successfully amplified in R. saharica. These loci provide tools for examining the population genetics and taxomomic boundaries in R. decollata and its allies.
Located in Library / RBINS Staff Publications
Article Reference Fifteen species in one: deciphering the Brachionus plicatilis species complex (Rotifera, Monogononta) through DNA taxonomy
Located in Library / RBINS Staff Publications 2016
Article Reference Finding loci associated to partial resistance to white pine blister rust in sugar pine (Pinus lambertiana Dougl.)
Located in Library / RBINS Staff Publications 2017
Article Reference First annotated draft genomes of nonmarine ostracods (Ostracoda, Crustacea) with different reproductive modes
Ostracods are one of the oldest crustacean groups with an excellent fossil record and high importance for phylogenetic analyses but genome resources for this class are still lacking. We have successfully assembled and annotated the first reference genomes for three species of nonmarine ostracods; two with obligate sexual reproduction (Cyprideis torosa and Notodromas monacha) and the putative ancient asexual Darwinula stevensoni. This kind of genomic research has so far been impeded by the small size of most ostracods and the absence of genetic resources such as linkage maps or BAC libraries that were available for other crustaceans. For genome assembly, we used an Illumina-based sequencing technology, resulting in assemblies of similar sizes for the three species (335–382 Mb) and with scaffold numbers and their N50 (19–56 kb) in the same orders of magnitude. Gene annotations were guided by transcriptome data from each species. The three assemblies are relatively complete with BUSCO scores of 92–96. The number of predicted genes (13,771–17,776) is in the same range as Branchiopoda genomes but lower than in most malacostracan genomes. These three reference genomes from nonmarine ostracods provide the urgently needed basis to further develop ostracods as models for evolutionary and ecological research.
Located in Library / RBINS Staff Publications 2021
Article Reference First archaeozoological evidence for haimation, the ‘invisible’ garum
The fish remains are described that were found at the bottom of an Early Roman ceramic jar from Aila Aqaba, Jordan. The bones, representing the gill apparatuses of at least 33 medium-sized tunas (Auxis; Scombridae) and a single individual of a lizardfish (Trachinocephalus myops; Synodontidae), are believed to correspond to haimation. This highly prized fish sauce, documented previously only from ancient textual evidence, was typically made from the gills and the entrails of tunnids to which salt was added. The sauce was not imported from the Mediterranean or the Black Sea, but made from local Red Sea fish as shown by the zoogeographical distribution of the lizardfish that is considered as stomach content of the tunas. Because the fish bones were found in a locally produced jar and because the calculated volume of the haimation that the bones represent corresponds more or less to the volume of the jar, it is concluded that this high-quality garum was produced in this container at Aila itself.
Located in Library / RBINS Staff Publications
Article Reference First Atlantic record of the rare infaunal shrimp Salmoneus erasimorum Dworschak, Abed-Navandi & Anker, 2000 (Malacostraca: Decapoda: Alpheidae)
The rare symbiotic alpheid shrimp Salmoneus erasimorum Dworschak, Abed-Navandi & Anker, 2000 was previously known from a single specimen collected with a suction pump on the Croatian coast in the Adriatic Sea, together with its host, the ghost shrimp, Gilvossius tyrrhenus (Petagna, 1792). A second record of S. erasimorum is presented here, with a diagnosis and the first colour photographs, based on a single specimen collected in northern Brittany, France, also with a suction pump, but without its host. This is also the first record of the species on the European coast of the Atlantic Ocean. An annotated list and a key to the species of Salmoneus currently known from the eastern Atlantic and the Mediterranean Sea are provided.
Located in Library / RBINS Staff Publications 2022 OA
Article Reference First checklist of the ants (Hymenoptera: Formicidae) of French Guiana
Located in Library / RBINS Staff Publications 2019
Article Reference First Clarkforkian Equivalent Land Mammal Age in the Latest Paleocene Basal Sparnacian Facies of Europe: Fauna, Flora, Paleoenvironment and (Bio)stratigraphy
The Paleocene-Eocene Thermal Maximum (PETM) is correlated with the first occurrences of earliest modern mammals in the Northern Hemisphere. The latest Paleocene Clarkforkian North American Land Mammal Age, that has yielded rodents and carnivorans, is the only exception to this rule. However, until now no pre-PETM localities have yielded modern mammals in Europe or Asia. We report the first Clarkforkian equivalent Land Mammal Age in the latest Paleocene deposits of the basal Sparnacian facies at Rivecourt, in the north-central part of the Paris Basin. The new terrestrial vertebrate and macroflora assemblages are analyzed through a multidisciplinary study including sedimentologic, stratigraphic, isotopic, and palynological aspects in order to reconstruct the paleoenvironment and to evaluate biochronologic and paleogeographic implications. The mammals are moderately diverse and not abundant, contrary to turtles and champsosaurs. The macroflora is exceptional in preservation and diversity with numerous angiosperms represented by flowers, fruits, seeds and wood preserved as lignite material, revealing an abundance of Arecaceae, Betulaceae, Icacinaceae, Menispermaceae, Vitaceae and probably Cornaceae. Results indicate a Late Paleocene age based on carbon isotope data, palynology and vertebrate occurrences such as the choristoderan Champsosaurus, the arctocyonid Arctocyon, and the plesiadapid Plesiadapis tricuspidens. However, several mammal species compare better with the earliest Eocene. Among these, the particular louisinid Teilhardimys musculus, also recorded from the latest Paleocene of the Spanish Pyrenees, suggests a younger age than the typical MP6 reference level. Nevertheless, the most important aspect of the Rivecourt fauna is the presence of dental remains of a rodent and a ‘‘miacid’’ carnivoran, attesting to the presence of two modern mammalian orders in the latest Paleocene of Europe. Interestingly, these two groups are also the only modern groups recorded from the latest Paleocene of North America, making Rivecourt the first direct equivalent to the Clarkforkian Land Mammal Age outside of North America.
Located in Library / RBINS Staff Publications