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Article Reference A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phasecontrast micro-tomography a mature technique for digital holotypes?
Located in Library / RBINS Staff Publications 2023
Article Reference application/x-troff-ms Seasonal variation of coastal currents and residual currents in the CAT BA – HA long coastal area (VIET NAM): Results of coherens model
The COHERENS model is used to investigate the temporal and spatial variation of the coastal currents in 2021 at the Cat Ba - Ha Long, northern Vietnam. The findings indicate that tidal oscillation has a notable impact on the current fields in short-term variations (hours to days). Meanwhile, the wind field and river discharge are the decisive factors affecting the seasonal variation of the current fields in Cat Ba - Ha Long coastal area. Furthermore, the characteristics of residual currents are significantly affected by river discharges and wind patterns, which vary across different months and seasons. During the southwest monsoon season (May to August), the residual currents have a prevailing direction towards the sea, from the west and south-southwest towards the east and north-northeast, reaching maximum speeds of approximately 0.1–0.15 m/s. Conversely, in the transitional and northeast monsoon seasons, the directions of residual currents are from the east-northeast to the west-southwest, with peak speed up to 0.2–0.25 m/s. Notably, the residual currents in the bottom and surface layers in the eastern-southwestern area of Cat Ba Island and the north of Ha Long Bay are in opposite directions
Located in Library / RBINS Staff Publications 2024
Article Reference PS document Lessons from the calibration and sensitivity analysis of a fish larval transport model
ABSTRACT: Numerous fish populations show strong year-to-year variations in recruitment. The early life stages play a crucial role in determining recruitment and dispersal patterns. A helpful tool to understand recruitment and dispersal involves simulations with a Lagrangian transport model, which results from the coupling between a hydrodynamic model and an individual-based model. Larval transport models require sound knowledge of the biological processes governing larval dispersal, and they may be highly sensitive to the parameters selected. Various assumptions about larval traits, behaviour and other model parameters can be tested by comparing simulation results with field data to identify the most sensitive parameters and to improve model calibration. This study shows that biological parameterization is more important than inter-annual variability in explaining the year-to-year differences in larval recruitment of common sole in the North Sea and the eastern English Channel. In contrast, year-to-year variability of connectivity leads to higher variability than changes in the biological parameters. The most influential parameters are pelagic larval duration, spawning period and mortality. Calibration over a 12 yr recruitment survey shows that a scenario with low mortality associated with a long larval duration and behaviour involving nycthemeral and tidal migration best reproduces the observations. This research provides insights into factors influencing fish dispersal and recruitment, suggesting a strategy for enhancing the accuracy of models in upcoming studies. The study supports the improvement of larval dispersal modelling by incorporating an easily applicable sensitivity analysis for both calibration and validation. Incorporating sensitivity analyses enhances larval dispersal models, providing performing tools that can contribute to informed fisheries management and understanding of recruitment variability.
Located in Library / RBINS Staff Publications 2024
Article Reference application/x-troff-ms EuroGOOS roadmap for operational coastal downstream services
The EuroGOOS Coastal working group examines the entire coastal value chain from coastal observations to services for coastal users. The main objective of the working group is to review the status quo, identify gaps and future steps needed to secure and improve the sustainability of the European coastal service provision. Within this framework, our white paper defines a EuroGOOS roadmap for sustained “community coastal downstream service” provision, provided by a broad EuroGOOS community with focus on the national and local scale services. After defining the coastal services in this context, we describe the main components of coastal service provision and explore community benefits and requirements through sectoral examples (aquaculture, coastal tourism, renewable energy, port, cross-sectoral) together with the main challenges and barriers to user uptake. Technology integration challenges are outlined with respect to multiparameter observations, multi-platform observations, the land-coast-ocean continuum, and multidisciplinary data integration. Finally, the technological, financial, and institutional sustainability of coastal observing and coastal service provision are discussed. The paper gives special attention to the delineation of upstream and downstream services, public-private partnerships and the important role of Copernicus in better covering the coastal zone. Therefore, our white paper is a policy and practice review providing a comprehensive overview, in-depth discussion and actionable recommendations (according to key short-term or medium-term priorities) on the envisaged elements of a roadmap for sustained coastal service provision. EuroGOOS, as an entity that unites European national operational oceanography centres, research institutes and scientists across various domains within the broader field of operational oceanography, offers to be the engine and intermediary for the knowledge transfer and communication of experiences, best practices and information, not only amongst its members, but also amongst the different (research) infrastructures, institutes and agencies that have interests in coastal oceanography in Europe
Located in Library / RBINS Staff Publications 2023
Article Reference Oxygen and sulfur stable isotope ratios of Late Devonian vertebrates trace the relative salinity of their aquatic environments
Late Devonian aquatic environments hosted the fin-to-limb transition in vertebrates. Upper Devonian (ca. 365–360 Ma) strata in Pennsylvania, USA, preserve a diversity of fishes and tetrapods in coastal marine to fluvial depositional environments, making this region ideal for investigating the ecology and evolution of Late Devonian vertebrates. A key unresolved issue has been reconstructing the specific aquatic habitats that hosted various vertebrates during this period. Specifically, the salinity of environments spanning fresh to shallow marine water is difficult to discern from sedimentological and paleontological analyses alone. Here, we analyze rare earth elements and yttrium (REY) as well as stable oxygen and sulfur isotope compositions (δ18O, δ34S) in fossil vertebrate bioapatite from late Famennian (ca. 362–360 Ma) strata of the Catskill and Lock Haven formations in the Appalachian Basin, USA, to determine the relative salinity of their aquatic environments. These results confirm the ecological euryhalinity of several taxa (Bothriolepis sp., tristichopterids, and Holoptychius sp.). Our results are the first demonstrating that some early tetrapod species occupied unequivocally freshwater habitats by late Famennian time (ca. 362–360 Ma). Our study shows that integrating sedimentological and paleontological data with combined oxygen and sulfur isotope analysis allows precise tracing of the relative salinity of vertebrate habitats deep in the past.
Located in Library / RBINS Staff Publications 2024
Article Reference Biofluorescence of the Crocodile Skinks, genus Tribolonotus: first report in Scincidae
Biofluorescence, the phenomenon where organisms absorb short wavelengths of light and re-emit longer wavelengths, has been documented in various reptile and amphibian groups. This study reports the first observation of UV-induced biofluorescence in the genus Tribolonotus (crocodile skinks), marking the first such report for the family Scincidae. Specimens of Tribolonotus novaeguineae, T. brongersmai, and T. gracilis were examined under UV light, revealing distinct fluorescence patterns. The fluorescence is primarily bone-induced, linked to the presence of osteoderms, although some skin-based fluorescence was also observed, particularly around the eyes. The study suggests potential ecological roles for this fluorescence, such as intraspecific signaling or predator-prey interactions, and highlights the need for further research to understand the functional significance of biofluorescence in these skinks.
Located in Library / RBINS Staff Publications 2024
Article Reference Biofluorescence in Morelia, Malayopython and Python: first reports for the Pythonidae
Ultraviolet (UV) induced biofluorescence in snakes has been underexplored compared to lizards. This study reports for the first time UV fluorescence in several Pythonidae species, including Morelia viridis, Malayopython reticulatus, and Python regius. Specimens were examined under both white and UV light, revealing that UV fluorescence in these snakes is likely skin-based, induced by chemical compounds rather than bone-based as seen in other reptiles. Notably, Morelia viridis and M. azurea exhibited a golden mustard yellow fluorescence, while Malayopython reticulatus displayed a complex pattern with intense yellow fluorescence. The study also found that UV fluorescence is absent in ethanol-preserved specimens, suggesting the degradation of fluorescent compounds during preservation. These findings contribute to the understanding of UV fluorescence in snakes and highlight the need for further research on its functional significance and the specific molecules involved.
Located in Library / RBINS Staff Publications 2024
Article Reference Vertebral morphology and intracolumnar variation of the iconic African viperid snake Atheris (Serpentes, Viperidae)
We here provide a detailed description of the vertebral morphology of the African arboreal viperid snakes of the genus Atheris. Vertebrae of three different species of the genus, i.e., Atheris desaixi, Atheris hispida, and Atheris katangensis, were investigated via the aid of μCT (micro‐computed tomography) scanning. We describe several vertebrae from different regions of the vertebral column for all three species, starting from the atlas‐axis complex to the caudal tip, in order to demonstrate important differences regarding the intracolumnar variation. Comparison of these three species shows an overall similar general morphology of the trunk vertebrae among the Atheris species. We extensively compare Atheris with other known viperids. As the sole arboreal genus of Viperinae the prehensile nature of the tail of Atheris is reflected in its caudal vertebral morphology, which is characterized by a high number of caudal vertebrae but also robust and anteroventrally oriented pleurapophyses as a skeletal adaptation, linked with the myology of the tail, to an arboreal lifestyle. We anticipate that the extensive figuring of these viperid specimens will also aid identifications in paleontology.
Located in Library / RBINS Staff Publications 2024
Article Reference Octet Stream The earliest evidence for deformation of livestock horns: The case of Predynastic sheep from Hierakonpolis, Egypt
Archaeozoological evidence for the modification of sheep horns during Egypt's Predynastic period was uncovered at Hierakonpolis, Upper Egypt. At HK6, the site's so-called elite cemetery, a grave, which was part of a larger mortuary complex dated to around 3700 BC, contained at least 6 large, castrated male sheep. One individual was polled, while four others were of the corkscrew-horn type, but their horns were not oriented in the natural, lateral direction. Instead, the horns had been intentionally manipulated to grow upwards and in three cases this resulted in upright, parallel horns. While comparable practices are well documented in Africa in cattle through both modern ethnographic observations and archaeozoological studies of material from third millennium BC Nubia (in Kerma, Sudan), the Hierakonpolis sheep provide the oldest evidence for horn modification of livestock, and the first demonstration of the practice applied to sheep. When describing the skulls particular attention is paid to the pathological traces and deformities, i.e. constrictions on the horn cores, holes at the horn core bases, and deformations of the frontals. In order to assess the possible methods used in Predynastic Hierakonpolis to redirect the horns, these observations are compared with ethnographic and archaeozoological data from the literature. Finally, the possible reasons why these sheep were modified are also discussed. This study indicates that Predynastic Egyptians were already familiar with horn modelling techniques and confirms that this practice has a long history in the Nile Valley.
Located in Library / RBINS Staff Publications 2024
Article Reference Description of a new species of the genus Anomophysis Quentin & Villiers, 1981 from Wetar Island (Contribution to the knowledge of Indonesian Prioninae-2) (Coleoptera, Cerambycidae, Prioninae)
Located in Library / RBINS Staff Publications 2024