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BioTIME 2.0: Expanding and Improving a Database of Biodiversity Time Series
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Motivation: Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R package (BioTIMEr) to facilitate use of the database. Main Types of Variables Included: The database is composed of one main data table containing the abundance records and 11 metadata tables. The data are organised in a hierarchy of scales where 11,989,233 records are nested in 1,603,067 sample events, from 553,253 sampling locations, which are nested in 708 studies. A study is defined as a sampling methodology applied to an assemblage for a minimum of 2 years. Spatial Location and Grain: Sampling locations in BioTIME are distributed across the planet, including marine, terrestrial and freshwater realms. Spatial grain size and extent vary across studies depending on sampling methodology. We recommend gridding of sampling locations into areas of consistent size. Time Period and Grain: The earliest time series in BioTIME start in 1874, and the most recent records are from 2023. Temporal grain and duration vary across studies. We recommend doing sample-level rarefaction to ensure consistent sampling effort through time before calculating any diversity metric. Major Taxa and Level of Measurement: The database includes any eukaryotic taxa, with a combined total of 56,400 taxa. Software Format: csv and. SQL.
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RBINS Staff Publications 2025
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Offshore wind turbines constitute benthic secondary production hotspots on and around constructions
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In response to climate change, the expansion of renewable energies leads to an increasing number of offshore wind farms in the North Sea. This comes along with an increase in (artificial) hard substrates in a mainly softbottom dominated marine area with so far largely unknown consequences for the underlying ecosystem functioning. We used a large combined dataset (both hard- and soft-substrate data) to model the secondary production of fouling communities on turbine foundations and of soft-bottom fauna inside and outside offshore wind farms (OWF) in the southern North Sea (Belgium, the Netherlands, Germany). We demonstrate that (1) a large amount of energy is channelled through fouling fauna on turbines (i.e., secondary production of fouling communities was on average 80 times higher than of soft-substrate communities), (2) 71 % of fouling production on turbines is released to the surrounding sediment (annual release: 221 ± 825 gC m 2 y 1 (SD)), and that (3) local production of soft-bottom communities is elevated up to a distance of 150–250 m from turbines. Production impacted area (PIA) was determined from hard- and soft-substrate data independently: mechanistic modelling of hard-substrate production export showed a production increase of 5 % up to 150 m from the turbine and generalised additive mixed models (GAMMs) based on soft-bottom fauna data suggested an elevated production up to 250 m from turbines. Accordingly, on the scale of an OWF (distance between turbines ~1000 m), the local production “halo” effect around turbines affects about 11 % of an OWF area (dependent on OWF configuration). The observed changes in benthic energy flow may lead to so far unknown changes at the ecosystem level from plankton communities to apex predators.
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RBINS Staff Publications 2025
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An exceptional concentration of marine fossils associated with wood-fall in the Terhagen Member (Boom Formation; Schelle, Belgium), Rupelian of the southern North Sea Basin
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RBINS Staff Publications 2023
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The Pliocene–Pleistocene transition in the subsurface of the Dutch-Belgian border region: insights from borehole Huijbergen
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RBINS Staff Publications 2023
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Granulometry, carbonate and glauconite content as stratigraphic tools to distinguish the Kiel Member and lower Antwerpen Member (Berchem Formation) in the City of Antwerp area (Belgium)
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RBINS Staff Publications 2023
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Characterization of the Miocene successions in the Schoten borehole (southern North Sea Basin, northern Belgium) and regional correlation with the Netherlands
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RBINS Staff Publications 2025
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Early Quaternary channel incisions at the base of the Merksplas Formation at the southern margin of the North Sea Basin
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RBINS Staff Publications 2025
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Effects of electromagnetic fields from an alternating current power cable on the embryogenesis of three benthic associated marine species
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The global expansion in offshore renewable energy, primarily through offshore wind, is associated with the proliferation of subsea power cables (SPCs) throughout marine and coastal benthic environments. The transmission of electrical power through these SPCs will introduce electromagnetic fields (EMFs) into the seabed and the adjacent water column, which raises questions regarding the potential impact on benthic fauna, particularly during critical developmental early-life stages for which research considering the effects of both the electric and magnetic components of SPC EMFs is lacking. We conducted an experiment on three benthic egg-laying species, – the elasmobranch Scyliorhinus canicula, the cephalopod Loligo vulgaris, and the cephalopod Sepia officinalis – found in areas under consideration for the routing of SPCs. We exposed the embryos to realistic EMF levels (magnetic field 4–6 μT) recreated in the laboratory using an AC power cable set-up that simulated the EMF conditions, and examined the morphological, physiological, and behavioural responses. Our findings indicate subtle responses to EMF exposure in S. canicula and L. vulgaris with faster growth rates and morphometric differences, but no responses in S. officinalis. Our results highlight the value of a multiple end point approach to determine the potential influence of chronic exposure to EMFs on embryogenesis in benthic fauna and provide a baseline for future studies to build upon. Although our study cannot extrapolate the consequences of individuallevel effects to population-level impacts, it does underscore the necessity of realistic and longer-term studies to assess the potential consequences of EMFs to marine fauna.
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RBINS Staff Publications 2025
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Variation in ecosystem services within biogenic reefs: The role of reef-building species under distinct hydrodynamic conditions
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To enhance the climate resilience of coastlines, measures are being implemented to protect and restore coastal ecosystems, such as biogenic reefs and dunes. These measures, known as Nature-based Solutions (NbS), provide protection against storms, coastal erosion, and flooding. They are also recognised for increasing biodiversity and delivering a range of ecosystem services (ES). This study investigated the ES provided by biogenic reefs composed of two reef-building species (Mytilus edulis and Lanice conchilega) under distinct hydrodynamic conditions. Three ES were assessed at two sites in the Belgian part of the North Sea: (1) coastal protection, (2) carbon sequestration, and (3) water quality regulation. The two sites have different hydrodynamic conditions due to their relative locations in relation to local sandbanks, making one site more exposed and the other more sheltered. The ES were quantified and monetised using in-situ measurements and literature data based on the SUstainable Marine Ecosystem Services (SUMES) model. The results suggest that the provision of ES in biogenic reefs is determined by multiple factors, including environmental conditions (e.g. hydrodynamics) and reefbuilding species. (1) Sediment accumulation was only observed under low hydrodynamic conditions, due to the higher settlement success of M. edulis and the presence of L. conchilega. (2) M. edulis “produces” carbon under both low and high hydrodynamic conditions, due to high respiration and biocalcification rates. However, low hydrodynamic conditions are more conducive to carbon burial, thus enhancing carbon sequestration. (3) M. edulis patches exhibited higher denitrification rates under low hydrodynamic conditions than under high hydrodynamic conditions or in L. conchilega patches, due to divergent macrobenthic functional diversity. In conclusion, the level of ES provision is determined by location and associated environmental conditions, as well as temporal and spatial variation in biogenic reefs and the physiological characteristics of reef builders. Therefore, both aspects need to be carefully considered when planning coastal protection measures and determining the provision of ES. Finally, when implementing NbS along high-energy coastlines, sheltered sites should be prioritised.
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RBINS Staff Publications 2025
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The dispersal of domestic cats from North Africa to Europe around 2000 years ago
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The domestic cat (Felis catus) descends from the African wildcat Felis lybica lybica. Its global distribution alongside humans testifies to its successful adaptation to anthropogenic environments. Uncertainty remains regarding whether domestic cats originated in the Levant, Egypt, or elsewhere in the natural range of African wildcats. The timing and circumstances of their dispersal into Europe are also unknown. In this study, the analysis of 87 ancient and modern cat genomes suggests that domestic cats did not spread to Europe with Neolithic farmers. Conversely, they were introduced to Europe around 2000 years ago, probably from North Africa. In addition, a separate earlier introduction (first millennium before the common era) of wildcats from Northwest Africa may have been responsible for the present-day wild population in Sardinia. Tracing the origins of domestic cats (Felis catus) has been limited by a lack of ancient DNA for these animals, as well by their morphological similarity to the African wildcat (F. lybica lybica) and European wildcat (F. sylvestris). De Martino et al. generated low- to medium-coverage genomes for 87 ancient, museum, and modern cats (see the Perspective by Losos). They found that domestic cats are most genetically similar to African wildcats, although there has been widespread gene flow between wild and domestic populations. European samples that cluster with domestic cats only appear in the 1st century CE, suggesting a later dispersal of domestic cats than previously thought. Although broader sampling is needed, this study shows the complexity of population dynamics that is often revealed when looking beyond mitochondrial DNA.
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RBINS Staff Publications 2025