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Article Reference Phylogenetic reconstructions of ostracods – a molecular approach. In: PARK, L.E. & A.J. SMITH (Eds.), Bridging the gap: trends in the ostracode biological and geological sciences
Located in Library / RBINS Staff Publications
Article Reference Phylogenetic relationships of Gomphocythere (Crustacea, Ostracoda) in Lake Tanganyika, East Africa
Located in Library / RBINS Staff Publications
Unpublished Reference Phylogenetics and Integrative Taxonomy of African Water Snakes (Squamata: Colubridae: Grayia)
Grayia is a genus of relatively large (1.5 – 2.5 m) aquatic Afrotropical snakes that is currently comprised of four species. Recent molecular phylogenies recovered Grayia in its own distinct subfamily (Grayiinae), which was strongly supported as the sister group to Colubrinae. Because tropical African snakes are generally understudied, the relationships within Grayia are poorly known. Due to morphological conservatism, identification is often difficult and previous studies involving Grayia included misidentified specimens in other genera. The goal of this study is to build a phylogenetic tree that can be used to understand the relationships and taxonomy of Grayia via an integrative taxonomic approach that combines molecular and morphological data. One nuclear (BDNF) and four mitochondrial genes (COI, cyt b, 16S and ND4) were used to construct a phylogenetic tree with Maximum likelihood methods; outgroups included the genera Calamaria, Sibynophis and Masticophis. Preliminary trees suggest G. ornata and G. smithii are sister taxa, whereas G. caesar (originally described as the sole member of the genus Xenurophis) is sister to G. tholloni. At least two divergent lineages of G. ornata suggest cryptic species are likely present in Democratic Republic of the Congo (DRC) and Republic of Congo.
Located in Library / RBINS Staff Publications 2021
Article Reference Phylogenomic Characterization of Lopma Virus and Praja Virus, Two Novel Rodent-Borne Arteriviruses
Located in Library / RBINS Staff Publications 2021 OA
Article Reference Phylogenomics of African radiation of Praomyini (Muridae: Murinae) rodents: first fully resolved phylogeny, evolutionary history and delimitation of extant genera
Located in Library / RBINS Staff Publications 2021
Article Reference Phylogenomics of Psammodynastes and Buhoma (Elapoidea: Serpentes), with the description of a new Asian snake family
Asian mock vipers of the genus Psammodynastes and African forest snakes of the genus Buhoma are two genera belonging to the snake superfamily Elapoidea. The phylogenetic placements of Psammodynastes and Buhoma within Elapoidea has been extremely unstable which has resulted in their uncertain and debated taxonomy. We used ultraconserved elements and traditional nuclear and mitochondrial markers to infer the phylogenetic relationships of these two genera with other elapoids. Psammodynastes, for which a reference genome has been sequenced, were found, with strong branch support, to be a relatively early diverging split within Elapoidea that is sister to a clade consisting of Elapidae, Micrelapidae and Lamprophiidae. Hence, we allocate Psammodynastes to its own family, Psammodynastidae new family. However, the phylogenetic position of Buhoma could not be resolved with a high degree of confidence. Attempts to identify the possible sources of conflict in the rapid radiation of elapoid snakes suggest that both hybridisation/introgression during the rapid diversification, including possible ghost introgression, as well as incomplete lineage sorting likely have had a confounding role. The usual practice of combining mitochondrial loci with nuclear genomic data appears to mislead phylogeny reconstructions in rapid radiation scenarios, especially in the absence of genome scale data.
Located in Library / RBINS Staff Publications 2024
Article Reference Phylogeny and historical biogeography of the Megalocypridinae ROME, 1965 with an updated checklist of this subfamily. In: R. C. WHATLEY & C. MAYBURY (eds.), Ostracoda and Global events, Proceedings of the 10th international symposium on Ostracoda
Located in Library / RBINS Staff Publications
Article Reference Phylogeny and phylogeography of Altolamprologus: ancient introgression and recent divergence in a rock-dwelling Lake Tanganyika cichlid genus
Located in Library / RBINS Staff Publications 2016
Article Reference Phylogeny, diversity, and species delimitation of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology
Located in Library / RBINS Staff Publications
Article Reference Phylogeographic analysis of avian influenza viruses isolated from Charadriiformes in Belgium confirms intercontinental reassortment in gulls.
Located in Library / RBINS Staff Publications