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Ultraconserved elements-based phylogenomic systematics of the snake superfamily Elapoidea, with the description of a new Afro-Asian family
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The highly diverse snake superfamily Elapoidea is considered to be a classic example of ancient, rapid radiation. Such radiations are challenging to fully resolve phylogenetically, with the highly diverse Elapoidea a case in point. Previous attempts at inferring a phylogeny of elapoids produced highly incongruent estimates of their evolutionary relationships, often with very low statistical support. We sought to resolve this situation by sequencing over 4,500 ultraconserved element loci from multiple representatives of every elapoid family/subfamily level taxon and inferring their phylogenetic relationships with multiple methods. Concatenation and multispecies coalescent based species trees yielded largely congruent and well-supported topologies. Hypotheses of a hard polytomy were not retained for any deep branches. Our phylogenies recovered Cyclocoridae and Elapidae as diverging early within Elapoidea. The Afro-Malagasy radiation of elapoid snakes, classified as multiple subfamilies of an inclusive Lamprophiidae by some earlier authors, was found to be monophyletic in all analyses. The genus Micrelaps was consistently recovered as sister to Lamprophiidae. We establish a new family, Micrelapidae fam. nov., for Micrelaps and assign Brachyophis to this family based on cranial osteological synapomorphy. We estimate that Elapoidea originated in the early Eocene and rapidly diversified into all the major lineages during this epoch. Ecological opportunities presented by the post-Cretaceous-Paleogene mass extinction event may have promoted the explosive radiation of elapoid snakes.
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RBINS Staff Publications 2023
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Contribution to the knowledge of the fauna of the family Pyramidellidae Gray, 1840 (Mollusca, Gastropoda) on the islands of Saint Helena and Ascension
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RBINS Staff Publications 2023
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The discovery of a new Fusitriton (Gastropoda, Cymatiidae) from deep waters of Tristan Da Cunha (southern Atlantic)
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RBINS Staff Publications 2019
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A new species of Columbellidae (Mollusca: Gastropoda) from Saint Helena Island
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RBINS Staff Publications 2019
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Scheenstia bernissartensis (Actinopterygii: Ginglymodi) from the Early Cretaceous of Bernissart, Belgium, with an appraisal of the ginglymodians evolutionary history
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RBINS Staff Publications 2019
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Bioerosional marks in the shells of two sea turtle taxa from the middle Eocene of Belgium
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This study analyses the diverse types of bioerosion marks on the shells of two sea turtle specimens from the Lutetian (middle Eocene) of Belgium. The objective is to understand the physical stressors affecting these organisms in ancient marine environments and to identify the potential factors responsible for these changes. The first specimen, the holotype of Eochelone brabantica, presents multiple erosive anomalies on its costal plates. The second individual, corresponding to Puppigerus camperi, exhibits different types of shell deviations, also of an erosive character. The combination of macroscopic and imaging techniques (i.e., CT scanning and 3D surface scanning) allow us the precise observation and identification of the different alterations. Comparative analyses suggest several external factors as potential causes of the anomalies of the two specimens (i.e., invertebrate feeding traces and trauma). This detailed examination provides specific insights into the types and causes of shell alterations in these Eocene turtles, offering a clearer understanding of their interactions in the marine ecosystem in which they lived.
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RBINS Staff Publications 2025 OA
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The biodiversity of the Eocene Messel vertebrates based on the Belgian Collections
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The paleontological collections of the Royal Belgian Institute of Natural Sciences include a beautiful collection of 393 vertebrate specimens from the Messel Pit: 58 fish, 18 amphibians, 79 reptiles, 108 birds and 130 mammals. This collection is the largest Messel collection outside Germany and belongs to the „big four” (Smith et al. 2024). It results from a fieldwork partnership with the Seckenberg Research Institute, Frankfurt between 1982 and 1988, so a few years before the Messel pit was listed in 1995 as UNESCO World Heritage site. With a few exceptions, most of the specimens have been collected by the Belgians. However, most of the specimens have been prepared by German preparators. Here we show the Messel biodiversity based on the Brussels collection. The collection is relatively well diversified and contains 24 type and figured specimens. Among them are remarkable specimens such as the holotype of the hyaenodont carnivorous mammal Lesmesodon edingeri, the paratypes of the trogon bird Masillatrogon pumilio and embalonurid bat Tachypteron franzeni, the exquisitely 3-D prepared turtle lovers Allaeochelys crassesculpta and armored crocodylia Diplocynodon deponiae, and the only skeleton of the basal perissodactyl Hallensia matthesi housed in a public collection. The archives related to this collection are currently being digitized and several new studies are now based on micro-CT scan technology allowing to „discover” hidden characters.
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RBINS Staff Publications 2025 OA
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Do diversification and dispersals of early Eocene perissodactyls differ from those of other modern mammals?
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Perissodactyls make their first appearance in the fossil record during the Paleocene-Eocene Thermal Maximum (PETM), 56 Ma ago, at the same time as most modern placental mammal orders. However, their early diversification remains unclear since all main groups (Equidae, Isectolophidae, Ceratomorpha, Ancylopoda and Brontotheriidae) appear at the same time with numerous genera and are already diverse, contrary to other modern mammal orders, which have a much lower diversity. Moreover, several early perissodactyl genera seem endemic to each of the three Holarctic continents, rather than cosmopolitan as is the case for other mammal groups. We investigate the early evolution of perissodactyls by analyzing a new dataset focusing on early species to obtain a new expansive phylogeny. This large-scale phylogeny shows that the number of early perissodactyl genera was over-estimated and supports the synonymy of several genera. In addition, many species that were named as “Hyracotherium” in the past (or sometimes “Eohippus”, the “dawn-horse”) are not actually closely related to horses, including Hyracotherium itself, but can be considered as basal perissodactyls. Among the latter, at least Pliolophus and Cardiolophus experienced vast and fast dispersals between North America, Europe and Asia, during the PETM. This paleobiogeographic scenario much resembles the one of other earliest Eocene mammals, which comprise genera that are often found in at least two continents, such as in artiodactyls, primates, carnivorans, hyaenodontids, hyopsodontids, phenacodontids or rodents. Here, we show that the paleobiogeographic distribution of earliest perissodactyls does not differ from that of other modern mammals.
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RBINS Staff Publications 2025 OA
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Tomography of three articulated perissodactyl skeletons from Messel
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The perissodactyls from the UNESCO World Heritage site of Messel (MP11; around 47 Ma) are among the most well-known fossils from this site, and belong to at least five different genera: three equoids (Propalaeotherium, Eurohippus, and Hallensia) and two tapiromorphs (Lophiodon and Hyrachyus). Here, we investigated by X-ray microtomography at the DTHE (MateIS Laboratory, Lyon) the anatomy of three articulated skeletons from the Royal Belgian Institute of Natural Sciences collection: two specimens of Eurohippus messelensis, as well as the only accessible skeleton of Hallensia matthesi. The segmented 3D models allow us to visualize for the first time some cranial, dental and postcranial features that were previously concealed. Surprisingly, the tooth rows of the two specimens of E. messelensis show two different morphologies. One is typical of E. messelensis whereas the other shows all the diagnostic characters of E. parvulus expressed by Franzen (2006). However, based on the monograph on equoids from Messel by Franzen (2007), E. messelensis was only recognized in Messel, whereas E. parvulus was known from several other localities, notably in the Geiseltal, but not in Messel. We thus suggest that E. parvulus may have also been present in Messel, which raises the question of their potential synonymy. Finally, the preservation of the skeleton of Hallensia matthesi does not permit to observe the fine anatomy of the skeleton, but still permits to discuss important characters such as the number of fingers.
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RBINS Staff Publications 2025 OA
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Stratigraphy, paleontology, and depositional setting of the Late Eocene (Priabonian) lower Pagat Member, Tanjung Formation, in the Asem Asem Basin, South Kalimantan, Indonesia
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Marine sedimentary rocks of the late Eocene Pagat Member of the Tanjung Formation in the Asem Asem Basin near Satui, Kalimantan, provide an important geological archive for understanding the paleontological evolution of southern Kalimantan (Indonesian Borneo) in the interval leading up the development of the Central Indo-Pacific marine biodiversity hotspot. In this paper, we describe amoderately diverse assemblage of marine invertebrates within a sedimentological and stratigraphical context. In the studied section, the Pagat Member of the Tanjung Formation records an interval of overall marine transgression and chronicles a transition from the marginal marine and continental siliciclastic succession in the underlying Tambak Member to the carbonate platform succession in the overlying Berai Formation. The lower part of the Pagat Member contains heterolithic interbedded siliciclastic sandstone and glauconitic shale, with thin bioclastic floatstone and bioclastic rudstone beds. This segues into a calcareous shale succession with common foraminiferal packstone/rudstone lenses interpreted as low-relief biostromes. A diverse trace fossil assemblage occurs primarily in a muddy/glauconitic sandstone, sandy mudstone, and bioclastic packstone/rudstone succession, constraining the depositional setting to a mid-ramp/mid to distal continental shelf setting below fair-weather wave base but above stormwave base. Each biostrome rests upon a storm-generated ravinement surface characterized by a low-diversity Glossifungites or Trypanites trace fossil assemblage. The erosional surfaces were colonized by organisms that preferred stable substrates, including larger benthic foraminifera, solitary corals, oysters, and serpulid annelid worms. The biostromes comprised islands of highmarine biodiversity on the mud-dominated Pagat coastline. Together, the biostromes analyzed in this study contained 13 genera of symbiont-bearing larger benthic foraminifera, ∼40 mollusk taxa, at least 5 brachyuran decapod genera, and 6 coral genera (Anthemiphyllia, Balanophyllia, Caryophyllia, Cycloseris, Trachyphyllia, and Trochocyathus), as well as a variety of bryozoans, serpulids, echinoids, and asterozoans. High foraminiferal and molluscan diversity, coupled with modest coral diversity, supports the hypothesis that the origin of the diverse tropical invertebrate faunas that characterize the modern Indo-Australian region may have occurred in the latest Eocene/earliest Oligocene.
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RBINS Staff Publications 2025 OA