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Article Reference The genus Labidodemas (Holothuriidae:Aspidochirotida) revisited with description of three new species and with re-positioning of Holothuria (Irenothuria) macculochi Deichman, 1958
Prior to the present revision the taxon Labidodemas comprised Labidodemas americanum, L. pertinax, L. rugosum and L. semperianum. An up-to-date re- evaluation of the group proved that at least four additional species need to be assigned to it. Three of these are new to science: one has recently been discovered in the shallow waters of KwaZulu-Natal, Republic of South Africa; one originates from Low Island, Australia, and was erroneously identified as L. semperianum, and one stems from South-West Sulawesi, again erroneously identified as L. semperianum. In addition, Holothuria maccullochi, classified in the monotypic subgenus Irenothuria, and Holothuria proceraspina are assigned to Labidodemas; the former as a valid species and the latter as a synonym of L. semperianum. Annotated taxonomic descriptions, distribution maps and an identification key are given. The new observation that L. americanum possesses Cuvierian tubules suggests that its rank remains at generic level rather than at family level as was recently proposed.
Located in Library / RBINS Staff Publications
Inbook Reference Het Woestijnegoed en het kasteel van Woestijne
Located in Library / RBINS Staff Publications 2020
Article Reference New mtDNA and Isotopic Evidence on Late Pleistocene Cave Bears in the Balkans: the Case-study of Magura Cave, NW Bulgaria
Recent genetic studies have shed light on the phylogeography of cave bears; however, their paleoecology and their diet are still debated, and data from south-eastern Europe are still scarce. Magura Cave, in northwest Bulgaria, has delivered rich faunal assemblages from the Late Pleistocene. The chronology of the excavated area spans from ca. 35 kya to more than 50 kya; the oldest stratigraphic layers being associated with final Middle Palaeolithic tools. The fauna comprises herbivores and carnivores, and potentially different taxa of cave bears, the dental remains of which also showed different tooth morphotypes, suggesting the co-existence of different dietary adaptations. We investigated the mitochondrial DNA (mtDNA) lineages of the cave bears from Magura Cave as well as the stable carbon and nitrogen isotope composition of the faunal assemblage. Our data revealed that, regardless of the tooth morphotypes, only maternal lineages of Ursus ingressus were present in Magura Cave. Interestingly, one specimen with Ursus arctos mtDNA was also found, showing a clear carnivore diet. In contrast, the U. ingressus specimens had a predominantly herbivorous diet. The tooth morphotypes were associated with significantly different δ13C values, suggesting different dietary adaptations.
Located in Library / RBINS Staff Publications 2020
Article Reference Devonian and Carboniferous dendroid graptolites from Belgium and their significance for the taxonomy of the Dendroidea
Located in Library / RBINS Staff Publications 2020
Inproceedings Reference Using ancient DNA to identify Bos primigenius in ancient cattle remains from Belgium
Aurochs (Bos primigenius) are the wild ancestors of the domesticated taurine cattle (Bos taurus). During the Holocene, populations of aurochs gradually declined until their extinction at the turn of the 17th century. DNA data suggest that domestic cattle in Europe descended from Near East aurochs that were domesticated and brought to Europe by the first farmers during the Neolithic period. Hybridization occurred more recently in Europe between domestic cattle and local wild aurochs. Most aurochs can be distinguished from domestic cattle osteometrically, but large-sized domestic cattle may be misidentified as aurochs. Based on mitochondrial DNA, most European aurochs differ from domestic cattle (haplogroup “P” versus “T”). With the aim to provide new data on the former distribution of aurochs in Europe, we used mitochondrial DNA to identify large bovid bones attributed to aurochs and dating from Epipaleolithic to medieval times. DNA was extracted from the bones of 11 specimens from Belgium in an ancient DNA lab. Shotgun DNA sequencing provided raw reads comprising 0.02-10% of endogenous DNA. For three samples, reads covered 74-98% of the bovid mitochondrial genome and enabled the identification of one aurochs from the Bronze Age (haplogroup “P”) and two cows from Roman and medieval times (haplogroup “T”). Among the other samples (covering 2-18% of the mitogenome), three Roman specimens could be assigned to the haplogroup “T” based on a few diagnostic positions. This study provides the first mitogenomic data for a Belgian aurochs and contributes to the identification of exceptionally large Roman bovid remains.
Located in Library / RBINS Staff Publications 2023
Article Reference Anatomy, Relationships, and Paleobiology of Cambaytherium (Mammalia, Perissodactylamorpha, Anthracobunia) from the lower Eocene of western India
The anatomy of Cambaytherium, a primitive, perissodactyl-like mammal from the lower Eocene Cambay Shale Formation of Gujarat, India, is described in detail on the basis of more than 350 specimens that represent almost the entire dentition and the skeleton. Cambaytherium combines plesiomorphic traits typical of archaic ungulates such as phenacodontids with derived traits characteristic of early perissodactyls. Cambaytherium was a subcursorial animal better adapted for running than phenacodontids but less specialized than early perissodactyls. The cheek teeth are bunodont with large upper molar conules, not lophodont as in early perissodactyls; like perissodactyls, however, the lower molars have twinned metaconids and m3 has an extended hypoconulid lobe. A steep wear gradient with heavy wear in the middle of the tooth row suggests an abrasive herbivorous diet. Three species of Cambaytherium are recognized: C. thewissi (∼23 kg), C. gracilis (∼10 kg), and C. marinus (∼99 kg). Body masses were estimated from tooth size and long bone dimensions. Biostratigraphic and isotopic evidence indicates an age of ca. 54.5 Ma for the Cambay Shale vertebrate fauna, the oldest Cenozoic continental vertebrate assemblage from India, near or prior to the initial collision with Asia. Cambaytheriidae (also including Nakusia and Perissobune) and Anthracobunidae are sister taxa, constituting the clade Anthracobunia, which is sister to Perissodactyla. We unite them in a new higher taxon, Perissodactylamorpha. The antiquity and occurrence of Cambaytherium—the most primitive known perissodactylamorph—in India near or before its collision with Asia suggest that Perissodactyla evolved during the Paleocene on the Indian Plate or in peripheral areas of southern or southwestern Asia.
Located in Library / RBINS Staff Publications 2020
Article Reference New and poorly known species of Cancellariidae (Neogastropoda: Cancellarioidea) from the Indian Ocean and the western Pacific
Located in Library / RBINS Staff Publications 2020
Article Reference Uncertainty assessment applied to marine subsurface datasets
A recently released voxel model quantifying aggregate resources of the Belgian part of the North Sea includes lithological properties of all Quaternary sediments and modelling-related uncertainty. As the underlying borehole data come from various sources and cover a long time-span, data-related uncertainties should be accounted for as well. Applying a tiered data-uncertainty assessment to a composite lithology dataset with uniform, standardized lithological descriptions and rigorously completed metadata fields, uncertainties were qualified and quantified for positioning, sampling and vintage. The uncertainty on horizontal positioning combines navigational errors, on-board and off-deck offsets and underwater drift. Sampling-gear uncertainty evaluates the suitability of each instrument in terms of its efficiency of sediment yield per lithological class. Vintage uncertainty provides a likelihood of temporal change since the moment of sampling, using the mobility of fine-scale bedforms as an indicator. For each uncertainty component, quality flags from 1 (very uncertain) to 5 (very certain) were defined and converted into corresponding uncertainty percentages meeting the input requirements of the voxel model. Obviously, an uncertainty-based data selection procedure, aimed at improving the confidence of data products, reduces data density. Whether or not this density reduction is detrimental to the spatial coverage of data products, will depend on their intended use. At the very least, demonstrable reductions in spatial coverage will help to highlight the need for future data acquisition and to optimize survey plans. By opening up our subsurface model with associated data uncertainties in a public decision support application, policy makers and other end users are better able to visualize overall confidence and identify areas with insufficient coverage meeting their needs. Having to work with a borehole dataset that is increasingly limited with depth below the seabed, engineering geologists and geospatial analysts in particular will profit from a better visualization of datarelated uncertainty.
Located in Library / RBINS Staff Publications 2020
Inproceedings Reference Sexual dimorphism in the walrus mandible: comparative description and geometric morphometrics
Located in Library / RBINS Staff Publications 2022
Article Reference One to host them all: genomics of the diverse bacterial endosymbionts of the spider Oedothorax gibbosus
Bacterial endosymbionts of the groups Wolbachia , Cardinium and Rickettsiaceae are well known for their diverse effects on their arthropod hosts, ranging from mutualistic relationships to reproductive phenotypes. Here, we analysed a unique system in which the dwarf spider Oedothorax gibbosus is co-infected with up to five different endosymbionts affiliated with Wolbachia , ‘Candidatus Tisiphia’ (formerly Torix group Rickettsia ), Cardinium and Rhabdochlamydia . Using short-read genome sequencing data, we show that the endosymbionts are heterogeneously distributed among O. gibbosus populations and are frequently found co-infecting spider individuals. To study this intricate host–endosymbiont system on a genome-resolved level, we used long-read sequencing to reconstruct closed genomes of the Wolbachia , ‘Ca. Tisiphia’ and Cardinium endosymbionts. We provide insights into the ecology and evolution of the endosymbionts and shed light on the interactions with their spider host. We detected high quantities of transposable elements in all endosymbiont genomes and provide evidence that ancestors of the Cardinium , ‘Ca. Tisiphia’ and Wolbachia endosymbionts have co-infected the same hosts in the past. Our findings contribute to broadening our knowledge about endosymbionts infecting one of the largest animal phyla on Earth and show the usefulness of transposable elements as an evolutionary ‘contact-tracing’ tool.
Located in Library / RBINS Staff Publications 2023