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Article Reference A survey of transposon landscapes in the putative ancient asexual ostracod Darwinula stevensoni
How asexual reproduction shapes transposable element (TE) content and diversity in eukaryotic genomes remains debated. We performed an initial survey of TE load and diversity in the putative ancient asexual ostracod Darwinula stevensoni. We examined long contiguous stretches of DNA in clones from a genomic fosmid library, totaling about 2.5 Mb, and supplemented these data with results on TE abundance and diversity from an Illumina draft genome. In contrast to other TE studies in putatively ancient asexuals, which revealed relatively low TE content, we found that at least 19% of the fosmid dataset and 26% of the genome assembly corresponded to known transposons. We observed a high diversity of transposon families, including LINE, gypsy, PLE, mariner/Tc, hAT, CMC, Sola2, Ginger, Merlin, Harbinger, MITEs and helitrons, with the prevalence of DNA transposons. The predominantly low levels of sequence diversity indicate that many TEs are or have recently been active. In the fosmid data, no correlation was found between telomeric repeats and non-LTR retrotransposons, which are present near telomeres in other taxa. Most TEs in the fosmid data were located outside of introns and almost none were found in exons. We also report an N-terminal Myb/SANT-like DNA-binding domain in site-specific R4/Dong non-LTR retrotransposons. Although initial results on transposable loads need to be verified with high quality draft genomes, this study provides important first insights into TE dynamics in putative ancient asexual ostracods.
Located in Library / RBINS Staff Publications 2021
Article Reference Octet Stream The worked bone industry and intrusive fauna associated with the prehistoric cave burials of Abri des Autours (Belgium)
ABSTRACT The excavation of the Abri des Autours, a rock-shelter located in southern Belgium, enabled the discovery of three human burials, two dated to the Early Mesolithic and a third dated to the Middle Neolithic. In addition to the human bones, more than 200 faunal remains were uncovered. A taphonomic analysis was undertaken to determine whether their presence resulted from anthropogenic activities and whether they are linked to the burials. Two assemblages were distinguished. The majority of the fauna corresponds to remains of animals found scattered throughout the cave, including in the Mesolithic levels. These are mainly portions of carcasses brought in to the rockshelter by scavengers or predators. Therefore, their deposition did not result from human activity. Thus far, no animal bone had been found in direct association with Mesolithic burials in Belgium, and this site conforms to that pattern. Moreover, this interpretation corroborates the archaeological study, which did not uncover any traces of domestic activity in the cave, during either the Mesolithic or the Neolithic. On the other hand, several bone artefacts, including various tools and a pendant, were also identified. With the exception of an isolated artefact, all of these were clearly associated with the Middle Neolithic burial (Michelsberg culture). This is only the fourth Neolithic cave burial to have yielded animal bone artefacts in Belgium. A preliminary micro-wear analysis has confirmed that these objects had been used before being deposited and has allowed us to propose several hypotheses concerning their original use.
Located in Library / RBINS Staff Publications 2017
Article Reference Philippine mossy forest stick insects: first record of the genus Otraleus Günther, 1935 in the country, with four new species, and the new genus Capuyanus gen. nov. (Phasmida, Diapheromeridae, Necrosciinae)
Located in Library / RBINS Staff Publications 2017
Article Reference Biodiversity Discovery and Taxonomic Data management in Uncertain Times of Big Data
Located in Library / RBINS collections by external author(s)
Article Reference The benthic foraminiferal response to the mid-Maastrichtian event in the NW-European chalk sea of the Maastrichtian type area
The mid-Maastrichtian carbon isotope event (MME), dated at ∼69 Ma, reflects a perturbation of the global carbon cycle that, in part, correlates with the enigmatic global extinction of ‘true’ (i.e., non-tegulated) inoceramid bivalves. The mechanisms of this extinction event are still debated. While both the inoceramid extirpation and MME have been recorded in a variety of deep-sea sites, little is known about their expression in epicontinental chalk seas. In order to study the shallow-marine signature of the MME in this epicontinental shelf sea, we have generated quantitative foraminiferal assemblage data for two quarries (Hallembaye, NE Belgium; ENCI, SE Netherlands) in the Maastrichtian type area, complemented by a species-specific benthic δ13C record. In contrast to deep-sea records, no significant changes in benthic foraminiferal assemblages and benthic foraminiferal accumulation rates are observed across the MME in the type-Maastrichtian area. At the Hallembaye quarry, the otherwise rare endobenthic species Cuneus trigona reaches a transient peak abundance of 33.3% at the onset of the MME, likely caused by a local transient change in organic matter flux to the seafloor. Nevertheless, high and near-constant species evenness shows that neither oxygen nor organic matter flux was limited across the extinction level or during the MME. Benthic foraminiferal data from the uppermost part of the studied section, above the MME, indicate a significant increase in food supply to the seafloor. Decreased amounts of terrigenous elements across this interval document a lesser riverine or aeolian influx, which means that the increased benthic productivity is linked to a different origin. Potentially, the continuous precipitation of chalk under nutrient-poor conditions in the Late Cretaceous chalk sea was enabled by efficient nutrient recycling in the water column. In shallower depositional settings, nutrient recycling took place closer to the seafloor, which allowed more organic matter to reach the bottom. These results provide insights in the importance of nutrient cycling for biological productivity in the NW-European chalk sea.
Located in Library / RBINS Staff Publications 2022 OA
Article Reference Molecular Identification of an Invasive Sarotherodon Species from the Atchakpa Freshwater Reservoir (Ouémé River Basin, Benin) and Comparison within S. melanotheron Using COI Markers
Located in Library / RBINS Staff Publications 2021 OA
Article Reference African lates perches (Teleostei, Latidae, Lates): Paraphyly of Nile perch and recent colonization of Lake Tanganyika
Located in Library / RBINS Staff Publications 2021
Techreport Reference Human impacts on ecosystem health and resources of Lake Edward
Located in Library / RBINS Staff Publications 2021 OA
Article Reference Diving into the unknown: fourteen new species of haplosclerid sponges (Demospongiae: Haplosclerida) revealed along the Peruvian coast (Southeastern Pacific)
Located in Library / RBINS Staff Publications 2022
Article Reference The Lanternfly genus Polydictya (Hemiptera: Fulgoromorpha: Fulgoridae) from Sulawesi and neighbouring islands, with the description of three new species
Located in Library / RBINS Staff Publications