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Article Reference Exploring Biological and Ecological Components of Sheep Astragalus Size and Shape Variation Using 3D Geometric Morphometrics: Towards A Bioarchaeological Proxy
One of the key challenges in the archaeology of sheep domestication is reconstructing the complex history of environmental and anthropogenic transformations undergone by sheep since the beginning of the domestication process of their wild ancestors. In recent years, GMM studies of sheep astragalus bones have contributed to our understanding of morphological differences between wild and domestic caprine species. However, the respective influences of biological and ecological factors on astragalus morphological variations in sheep remain poorly documented. This limitation hinders a comprehensive understanding of its biosystematic resolution and, consequently, its use as a proxy in archaeological contexts to investigate early selective breeding and the emergence of sheep breeds in Southwest Asia. This paper presents the results of a morphological study of 96 astragali using 3D geometric morphometrics, focusing primarily on modern Eurasian and African sheep breeds and landraces. The study is based on a well-documented comparative collection encompassing phenotypical traits (breed, sex, age, presence/absence of horns, coat and tail type, weight, body length); ecological characteristics (climate, geography, environment, elevation, topography); and breeding strategies (mobility). The results demonstrate that the 3D astragalus morphological pattern is a reliable marker for distinguishing one sheep breed from another. They suggest that astragalus morphology is only slightly influenced by phenotypic markers. The study further explores the effects of environmental and climatic factors on phenotypic variation and highlights the potential of the astragalus as an ecomorphological marker. Finally, the current limitations in interpreting the relationship between astragalus morphological variation and mobility strategies in archaeological contexts are discussed.
Located in Library / RBINS Staff Publications 2026
Inproceedings Reference Exploring Hidden Biodiversity: A Diptera Survey in Rural Eastern Slovakia
Located in Library / RBINS Staff Publications 2024
Article Reference Exploring hidden parasite diversity with environmental DNA metabarcoding during a ParasiteBlitz across a coastal habitat gradient
Environmental DNA (eDNA) metabarcoding has lagged in parasite biodiversity assessments. We implemented this method to examine parasite diversity in sediment and water from 4 physically connected aquatic habitats in coastal South Carolina, USA, as part of a ParasiteBlitz in April 2023. Sediment was collected using a syringe corer, and water was sampled using active filtration and passive collection. Five amplicon libraries, using primers targeting portions of the mitochondrial COI of platyhelminths and 18S ribosomal RNA genes of nematodes, myxozoans, microsporidians, and protists, successfully yielded parasite sequences. Out of >5.8 million sequences, we identified >1,000 parasite amplicon sequence variants (ASVs) corresponding to ~600 parasite operational taxonomic units, from 6 parasite groups. Most diversity was observed among the microsporidians, whose assay demonstrated the highest fidelity. Actively-filtered water samples captured ASVs of all 6 groups, whereas sediment captured only 4, despite yielding 3× as many ASVs. Low DNA yields from passive water samples resulted in fewer, but some unique, ASVs representing 3 parasite groups. The most efficient sampling method varied with respect to parasite group across habitats, and the parasite communities from each habitat were distinct regardless of sampling method. We detected ASVs of 9 named species, 4 of which may represent introductions to the US. The abundance of our results demonstrates the effectiveness and efficiency of eDNA metabarcoding for assessing parasite diversity during short, intensive surveys, and highlights the critical need for more comprehensive sequence databases and the development of primers for those parasite taxa that elude detection using eDNA methods.
Located in Library / RBINS Staff Publications 2025
Article Reference Exploring species level taxonomy and species delimitation methods in the facultatively self-fertilizing land snail genus Rumina (Gastropoda: Pulmonata)
Located in Library / RBINS Staff Publications
Article Reference Exploring the bushmeat market in Brussels, Belgium: a clandestine luxury business
Located in Library / RBINS Staff Publications 2021
Inproceedings Reference Exploring the East African Rift Lakes: investigating the ichthyofauna and biogeography in lakes Kivu, Edward and Albert
Located in Library / RBINS Staff Publications 2023 OA
Inproceedings Reference Exploring the success of Enteromius: insights from the Lake Edward system
Located in Library / RBINS Staff Publications 2023 OA
Article Reference chemical/x-molconn-Z Exploring the use of Cytochrome Oxidase c Subunit 1 (COI) for DNA barcoding of free-living marine nematodes
Background: The identification of free-living marine nematodes is difficult because of the paucity of easily scorable diagnostic morphological characters. Consequently, molecular identification tools could solve this problem. Unfortunately, hitherto most of these tools relied on 18S rDNA and 28S rDNA sequences, which often lack sufficient resolution at the species level. In contrast, only a few mitochondrial COI data are available for free-living marine nematodes. Therefore, we investigate the amplification and sequencing success of two partitions of the COI gene, the M1-M6 barcoding region and the I3-M11 partition. Methodology: Both partitions were analysed in 41 nematode species from a wide phylogenetic range. The taxon specific primers for the I3-M11 partition outperformed the universal M1-M6 primers in terms of amplification success (87.8\% vs. 65.8\%, respectively) and produced a higher number of bidirectional COI sequences (65.8\% vs 39.0\%, respectively). A threshold value of 5\% K2P genetic divergence marked a clear DNA barcoding gap separating intra-and interspecific distances: 99.3\% of all interspecific comparisons were 〉0.05, while 99.5\% of all intraspecific comparisons were 〈0.05 K2P distance. Conclusion: The I3-M11 partition reliably identifies a wide range of marine nematodes, and our data show the need for a strict scrutiny of the obtained sequences, since contamination, nuclear pseudogenes and endosymbionts may confuse nematode species identification by COI sequences.
Located in Library / No RBINS Staff publications
Article Reference Exploring the use of micro-computed tomography (micro-CT) in the taxonomy of sea cucumbers: a case-study on the gravel sea cucumber Neopentadactyla mixta (Östergren, 1898) (Echinodermata, Holothuroidea, Phyllophoridae)
Located in Library / RBINS Staff Publications 2021
Article Reference Extending Our Scientific Reach in Arboreal Ecosystems for Research and Management
Located in Library / RBINS Staff Publications 2018