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Article Reference The Freshwater Information Platform: a global online network providing data, tools and resources for science and policy support
Freshwaters are among the most complex, dynamic, and diverse ecosystems globally. Despite their small share of the earth’s surface (less than 1%) they are home to over 10% of all known animal species. Biodiversity decrease in general and freshwater biodiversity decline in particular have recently received increasing attention, and various policy instruments are now targeting the conservation, protection and enhancement of biodiversity and associated ecosystem services. Surveillance programs as well as a variety of research projects have been producing a tremendous amount of freshwater-related information. Though there have been various attempts to build infrastructures for online collection of such data, tools and reports, they often provide only limited access to resources that can readily be extracted for conducting large scale analyses. Here, we present the Freshwater Information Platform, an open system of relevant freshwater biodiversity-related information. We provide a comprehensive overview of the platform’s core components, highlight their values, present options for their use, and discuss future developments. This is complemented by information on the platform’s current management structure, options for contributing data and research results and an outlook for the future.
Located in Library / RBINS Staff Publications 2019
Article Reference Unexpected fish diversity gradients in the Amazon basin
Using the most comprehensive fish occurrence database, we evaluated the importance of ecological and historical drivers in diversity patterns of subdrainage basins across the Amazon system. Linear models reveal the influence of climatic conditions, habitat size and sub-basin isolation on species diversity. Unexpectedly, the species richness model also highlighted a negative upriver-downriver gradient, contrary to predictions of increasing richness at more downriver locations along fluvial gradients. This reverse gradient may be linked to the history of the Amazon drainage network, which, after isolation as western and eastern basins throughout the Miocene, only began flowing eastward 1–9 million years (Ma) ago. Our results suggest that the main center of fish diversity was located westward, with fish dispersal progressing eastward after the basins were united and the Amazon River assumed its modern course toward the Atlantic. This dispersal process seems not yet achieved, suggesting a recent formation of the current Amazon system.
Located in Library / RBINS Staff Publications 2019
Article Reference EJT editorial standard for the semantic enhancement of specimen data in taxonomy literature
This paper describes a set of guidelines for the citation of zoological and botanical specimens in the European Journal of Taxonomy. The guidelines stipulate controlled vocabularies and precise formats for presenting the specimens examined within a taxonomic publication, which allow for the rich data associated with the primary research material to be harvested, distributed and interlinked online via international biodiversity data aggregators. Herein we explain how the EJT editorial standard was defined and how this initiative fits into the journal’s project to semantically enhance its publications using the Plazi TaxPub DTD extension. By establishing a standardised format for the citation of taxonomic specimens, the journal intends to widen the distribution of and improve accessibility to the data it publishes. Authors who conform to these guidelines will benefit from higher visibility and new ways of visualising their work. In a wider context, we hope that other taxonomy journals will adopt this approach to their publications, adapting their working methods to enable domain-specific text mining to take place. If specimen data can be efficiently cited, harvested and linked to wider resources, we propose that there is also the potential to develop alternative metrics for assessing impact and productivity within the natural sciences.
Located in Library / RBINS Staff Publications 2019
Article Reference The new Southeast Asian genus Cambonilla gen. nov.(Zodariidae, Araneae):‘bis repetita placent’
The new genus Cambonilla Jocqué gen. nov. is described on the base of two species, each known from both sexes. A cladistic analysis based on morphology, showed that the new genus is the sister-group of Heliconilla Dankittipakul, Jocqué & Singtripop, 2012 with which it shares the granulated carapace with branched setae and the marbled ventral abdominal pattern, but differs by the abdominal, tubular sclerotized protrusion around the pedicel in males and the absence of posterior ventral abdominal spines in the female. The type species Cambonilla securicula Jocqué gen. et sp. nov. was found in rainforest along the Mekong River in Cambodia and Laos. The second species Cambonilla symphonia Jocqué & Henrard gen. et sp. nov., provided with conspicuous femoral stridulating organs, was recorded from the same localities but in Cambodia only. An illustrated key to the genera of tropical Asia is presented.
Located in Library / RBINS Staff Publications 2019
Article Reference Precision mapping of snail habitat provides a powerful indicator of human schistosomiasis transmission
Recently, the World Health Organization recognized that efforts to interrupt schistosomiasis transmission through mass drug administration have been ineffective in some regions; one of their new recommended strategies for global schistosomiasis control emphasizes targeting the freshwater snails that transmit schistosome parasites. We sought to identify robust indicators that would enable precision targeting of these snails. At the site of the world’s largest recorded schistosomiasis epidemic—the Lower Senegal River Basin in Senegal—intensive sampling revealed positive relationships between intermediate host snails (abundance, density, and prevalence) and human urogenital schistosomiasis reinfection (prevalence and intensity in schoolchildren after drug administration). However, we also found that snail distributions were so patchy in space and time that obtaining useful data required effort that exceeds what is feasible in standard monitoring and control campaigns. Instead, we identified several environmental proxies that were more effective than snail variables for predicting human infection: the area covered by suitable snail habitat (i.e., floating, nonemergent vegetation), the percent cover by suitable snail habitat, and size of the water contact area. Unlike snail surveys, which require hundreds of person-hours per site to conduct, habitat coverage and site area can be quickly estimated with drone or satellite imagery. This, in turn, makes possible large-scale, high-resolution estimation of human urogenital schistosomiasis risk to support targeting of both mass drug administration and snail control efforts.
Located in Library / RBINS Staff Publications 2019
Article Reference Titanodula gen. nov., a new genus of giant Oriental praying mantises (Mantodea: Mantidae: Hierodulinae)
Located in Library / RBINS Staff Publications 2020
Article Reference Hierodula confusa sp. nov., a new species of Hierodula Burmeister, 1838 (Mantodea: Mantidae: Hierodulinae: Hierodulini)
Located in Library / RBINS Staff Publications 2020
Preprint Reference Unravelling the evolutionary relationships of hepaciviruses within and across rodent hosts
Located in Library / RBINS Staff Publications 2020
Article Reference How different are the Kebara 2 ribs to modern humans?
This study analyses rib geometric parameters of individual ribs of 14 modern human subjects (7 males and 7 females) in comparison to the reconstructed ribs of the Kebara 2 skeleton which was taken from the reconstruction of a Neandertal thorax by Sawyer & Maley (2005). Three-dimensional (3D) models were segmented from CT scans and each rib vertex cloud was placed into a local coordinate system defined from the rib principal axes. Rib clouds were then analysed using best fitting ellipses of the external contours of the cross-section areas. The centroid of each ellipse was then used to measure the centroidal pathway between each slice (rib midline). Curvature of the ribs was measured from the mid-line of the ribs as the sum of angles between successive centroids in adjacent cross sections. Distinct common patterns were noted in all rib geometric parameters for modern humans. The Kebara 2 reconstructed ribs also followed the same patterns. This study demonstrated that there are differences between the sexes in rib geometrical parameters, with females showing smaller rib width, chord length and arc length, but greater curvature (rib torsion, rib axial curvature, rib anterior-posterior bending) than males. The Kebara 2 reconstructed ribs were within the modern human range for the majority of geometrical parameters.
Located in Library / RBINS Staff Publications 2017
Article Reference Monitoring of Anthropogenic Sediment Plumes in the Clarion-Clipperton Zone, NE Equatorial Pacific Ocean
Located in Library / RBINS Staff Publications 2022 OA