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Article Reference A survey of transposon landscapes in the putative ancient asexual ostracod Darwinula stevensoni
How asexual reproduction shapes transposable element (TE) content and diversity in eukaryotic genomes remains debated. We performed an initial survey of TE load and diversity in the putative ancient asexual ostracod Darwinula stevensoni. We examined long contiguous stretches of DNA in clones from a genomic fosmid library, totaling about 2.5 Mb, and supplemented these data with results on TE abundance and diversity from an Illumina draft genome. In contrast to other TE studies in putatively ancient asexuals, which revealed relatively low TE content, we found that at least 19% of the fosmid dataset and 26% of the genome assembly corresponded to known transposons. We observed a high diversity of transposon families, including LINE, gypsy, PLE, mariner/Tc, hAT, CMC, Sola2, Ginger, Merlin, Harbinger, MITEs and helitrons, with the prevalence of DNA transposons. The predominantly low levels of sequence diversity indicate that many TEs are or have recently been active. In the fosmid data, no correlation was found between telomeric repeats and non-LTR retrotransposons, which are present near telomeres in other taxa. Most TEs in the fosmid data were located outside of introns and almost none were found in exons. We also report an N-terminal Myb/SANT-like DNA-binding domain in site-specific R4/Dong non-LTR retrotransposons. Although initial results on transposable loads need to be verified with high quality draft genomes, this study provides important first insights into TE dynamics in putative ancient asexual ostracods.
Located in Library / RBINS Staff Publications 2021
Book Reference A Systematic Revision of the Land Snails of the Western Ghats of India
Located in Library / RBINS Staff Publications
Article Reference A Tale of Three Oceans — Taxonomy of the Holothuria (Thymiosycia) arenicola Semper, 1868 complex (Echinodermata: Holoturoidea: Holothuriidae)
The ubiquitous sea cucumber Holothuria (Thymiosycia) arenicola Semper, 1868, externally characterized by a double row of dark blotches of various sizes on its dorsal body wall and a cryptic behaviour, is generally assumed to have a wide tropical distribution, although it has not been reported from the Eastern tlantic. Careful morphological examination, with emphasis on the ossicle assemblage, of type and non-type H. arenicola specimens sampled in the Indian, Pacific and tlantic Ocean, its subjective synonyms and species with a similar colouration and habit, revealed that H. arenicola is often confused with other species. This paper formally separates the different species in the H. arenicola complex, one of them being a species new to science: Holothuria (Thymiosycia) kerriensis sp. nov. dditionally, we describe two other species that are often confused with H. arenicola: Holothuria (Lessonothuria) gracilis Semper, 1868 and H. (Thymiosycia) strigosa Selenka, 1867. The H. arenicola complex per se is keyed-out, with the ossicle assemblage of the musculature being recognised as an important, previously largely neglected, guide. This contribution highlights the importance of building and curating well-maintaned natural history collections to understand biodiversity through time and space.
Located in Library / RBINS Staff Publications 2024
Article Reference A techno-economic approach for capacity assessment and ranking of potential options for geological storage of CO2 in Austria
Located in Library / RBINS Staff Publications 2016
Article Reference A tiny dolphin (Cetacea, Odontoceti, Kentriodontidae) cranium from the Middle Miocene of the southern North Sea with a rare osteological malformation
Located in Library / RBINS Staff Publications 2025
Inproceedings Reference A tool for feeding and mating: the Swiss Army stylet of Gyratrix hermaphroditus (Rhabdocoela, Platyhelminthes)
Located in Library / RBINS Staff Publications 2023 OA
Article Reference A trait-based framework to identify North Sea fauna vulnerable to underwater noise
In the absence of an internationally coordinated management strategy, continued exploitation of the North Sea is expected to exacerbate underwater radiated noise (URN), heightening risks of adverse impacts on marine life. Identifying indicator species and their habitats is a fundamental step in the EU framework for setting a scientifically grounded underwater noise limit value (UNLV). While past research has primarily emphasized marine mammals, there is an increasing effort to highlight that the impacts of URN extend to fishes and invertebrates. To support indicator species selection in the North Sea for URN risk assessment, a trait-based vulnerability scoring system for marine mammals, fishes and invertebrates was developed. Each scoring system evaluates multiple attributes related to a species' capacity to detect and produce sound, as well as the documented impacts from both impulsive and continuous anthropogenic noise, and highlights species of particular concern and socio-ecological significance. Five potential indicator species were identified from each of the three taxonomic groups (marine mammals, fishes and invertebrates) for URN risk assessment. The proposed vulnerability scoring system serves as an adaptive framework, open to iterative refinement as bioacoustics knowledge advances. Although data gaps persist, the establishment of regional UNLV to safeguard vulnerable species should not be delayed. By linking URN exposure with key habitats of identified indicator species, this approach facilitates an ecosystem-based management of URN in the North Sea and provides a transferable framework for other regions.
Located in Library / RBINS Staff Publications 2026
Article Reference A vertebra of a small species of Pachycetus from the North Sea and its inner structure and vascularity compared with other basilosaurid vertebrae from the same site
Located in Library / RBINS Staff Publications 2023
Article Reference A wind of change for soft-sediment infauna within operational offshore windfarms
In this study, “ artificial reef ” (AR) impacts of offshore windfarms (OWFs) on the surrounding soft-sediments were investigated. Benthic grab samples were collected at nearby (37.5 m) and distant (500 or 350 m) positions from turbines of two Belgian OWFs (Belwind: monopiles and C-Power: jackets). Higher macrobenthos abundance and species richness were found nearby jacket foundations of C-Power compared to distant positions and differences were most pronounced within deeper sediments (i.e., gullies between sandbanks) at intermediate levels of fine sand fractions (10 – 20%) and total organic matter (0.5 – 0.9%). Strong benthic enrichment ( > 1000 ind. m 2, > 20 spp. sample 1) was also linked with higher fine sand fractions ( > 20%) near the jackets. Moreover, nearby sediments showed higher occurrences of coastal species and habitat diversification was promoted by Mytilus edulis shell debris and alive organisms ( “ biofouling drop-offs ” ). The lack of similar results around monopiles (Belwind) confirms that the extent of detectable AR-effects depends on site- and turbine specific factors.
Located in Library / RBINS Staff Publications 2023
Inproceedings Reference Abc Taxa, Field guide to the brittle and basket stars (Echinodermata: ophiuroidea) of South Africa.
Brittle and basket stars (ophiuroids) are one of five extant classes of the phylum Echinodermata and have a fossil record dating back almost 500 million years to the Early Ordovician. Today they remain diverse and widespread, with over 260 described genera and over 2 000 extant species globally, more than any other class of echinoderm. Ophiuroid species are found across all marine habitats from the intertidal shore to the abyss. In southern Africa, the ophiuroid fauna has been studied extensively by a number of authors and is relatively well-known. The last published review of the southern African Ophiuroidea however was by Clark and Courtman-Stock in 1976. It included 101 species reported from within the boundaries of South Africa. In the 40 years since that publication the number of species has risen to 136. This identification guide, which is the nineteenth volume of the series Abc Taxa includes a taxonomic key to all 136 species, and gives key references, distribution maps, diagnoses, scaled photographs (where possible), and a synthesis of known ecological and depth information for each. The guide is designed to be comprehensive, well-illustrated and easy to use for both naturalists and professional biologists. Taxonomic terms, morphological characteristics and technical expressions are defined and described in detail, with illustrations to clarify some aspects of the terminology. A checklist of all species in the region is also included, and indicates which species are endemic (33), for which we report significant range extensions (23), which have been recorded as new to the South African fauna (28) since the previous monograph of Clark and Courtman-Stock (1976) and which have undergone taxonomic revisions since that time (28). This contribution delivers a copiously illustrated overview of the volume and details how it has been diffused in South Africa and beyond.
Located in Library / RBINS Staff Publications 2021