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Webpublished Reference Onderwijs in relatie tot P2P. Toetsing aan praktijk en theorie. Voorstelling van de praktijken. Duurzaamheidsdilemma’s architectuur.
Located in Library / RBINS Staff Publications
Article Reference One to host them all: genomics of the diverse bacterial endosymbionts of the spider Oedothorax gibbosus
Bacterial endosymbionts of the groups Wolbachia , Cardinium and Rickettsiaceae are well known for their diverse effects on their arthropod hosts, ranging from mutualistic relationships to reproductive phenotypes. Here, we analysed a unique system in which the dwarf spider Oedothorax gibbosus is co-infected with up to five different endosymbionts affiliated with Wolbachia , ‘Candidatus Tisiphia’ (formerly Torix group Rickettsia ), Cardinium and Rhabdochlamydia . Using short-read genome sequencing data, we show that the endosymbionts are heterogeneously distributed among O. gibbosus populations and are frequently found co-infecting spider individuals. To study this intricate host–endosymbiont system on a genome-resolved level, we used long-read sequencing to reconstruct closed genomes of the Wolbachia , ‘Ca. Tisiphia’ and Cardinium endosymbionts. We provide insights into the ecology and evolution of the endosymbionts and shed light on the interactions with their spider host. We detected high quantities of transposable elements in all endosymbiont genomes and provide evidence that ancestors of the Cardinium , ‘Ca. Tisiphia’ and Wolbachia endosymbionts have co-infected the same hosts in the past. Our findings contribute to broadening our knowledge about endosymbionts infecting one of the largest animal phyla on Earth and show the usefulness of transposable elements as an evolutionary ‘contact-tracing’ tool.
Located in Library / RBINS Staff Publications 2023
Inproceedings Reference One Year of Taxonomic Capacity Building by the Belgian Focal Point to the GTI
see pdf
Located in Library / RBINS Staff Publications
Webpublished Reference Ontdekking van een fossiele walvis in Doel
Located in Library / RBINS Staff Publications
Inproceedings Reference Optimal geodata centralization and disclosure as support for subsurface exploration
It is widely known that the subsurface will play a crucial role in the transition towards a carbon-neutral society, with the aid of technologies like geothermal energy, CO2-storage, .... Nevertheless, still a lot of aspects concerning the subsurface, its structure and characteristics remain to be investigated to facilitate the use of underground space in an efficient and safe way. In-depth investigation of the subsurface with conventional techniques such as seismic campaigns or drillings requires high investments, and it is not always straightforward to determine the success-rate upfront. This leads to geodata collections typically displaying a large variety and scatter, both concerning data (type) availability and in spatial distribution. Additionally, incorporating subsurface knowledge from neighboring countries often is challenging, but at the same time indispensable to increase understanding of the own subsurface, not least because some projects may display cross-border influences. It is clear that subsurface exploration benefits from a cross-border and cross-thematic data collection and interpretation approach. One way to organize such data centralization was explored in the framework of the European Horizon2020-project GeoConnect³d, by means of constructing a Structural Framework (SF) and a database of Geomanifestations (GM) for several pilot study areas. The Structural Framework defines geological units by its limits (e.g., faults, terrane boundaries, ...). All known limits and associated parameters are structured in a uniform and inter-connected way. Furthermore, the SF is designed on multiple zoom-levels, hence it can serve as a real backbone to integrate multiple other subsurface models of various scale and resolution together. Geomanifestations are anomalous observations covering a wide range of geo-disciplines, including —but not limited to— temperature, geochemistry, mineralogy and even geophysics data. Such irregularities are too often excluded or ignored in view of the larger cloud of ‘normal’ datapoints. Nevertheless, precisely these anomalies can be of great value for identifying subsurface processes and serve as an excellent pathway for communication to non-experts, and also as guideline for further research. In addition to GIS- and attribute-information, Factsheets summarize the relations between individual geomanifestations, and, if applicable, their connection to the Structural Framework. Especially the latter, the combination of the (independent) elements SF and GM, gives a powerful tool that allows exploring the subsurface in an original and cost-efficient way. The newly gained insights can be directly linked and are extremely relevant to the use of the subsurface, either as storage space or as renewable/green energy-source. But it goes further than that. The overall usability of the SF and GM database is far more fundamental, as it gives innovative clues about characteristics and processes at play in the subsurface, such as fault permeability and connectivity, the presence of advection cells in the upper crust, or gas origin and migration pathways. To quote just one example; in the area of Spa, Belgium, elevated 3He/4He-ratios were analyzed (Griesshaber et al., 1992), a parameter that can highlight mantle gas contribution in gas seeps (White, 2013). This observation was unexpected given the far distance from any volcanic activity, but suggests the presence of deep-seated, transcrustal faults and/or a large-distance connectivity till the Eifel area where mantle-derived magma was involved in recent volcanism. When indirect indications like this are not considered further, such valuable subsurface knowledge is easily overlooked and not at all taken into account for investigating in more detail in the future. Even when limited resources or funding is available, the above-illustrated SF+GM approach can shed new light on properties and processes of the subsurface, given its novel and multidisciplinary approach. An inherent drawback, however, is that such a database is never complete and includes information from a variety of sources. Not only does this demands careful consideration on which data is included (or not), it also has to be taken into account for future database expansion as well as for data interpretation. Simple visualizations on a map without further (geological) background, e.g., combining both surface and at depth data as is the case for Wiesbaden, Germany (Mittelbach & Siebert, 2014), may lead to false conclusions. However, the provided Factsheets and metadata can help in this. Furthermore, at this moment, a large proportion of the entries depends on the availability of literature data, which implies some data source bias is unavoidable. For example, CO2-data typically is measured for springs and streams, while dry CO2-seeps easier remain unnoticed and therefore are reported less consistently. New data collection campaigns, possibly including bio-indicators like plants or ants (e.g., Berberich & Schreiber, 2013), can provide a good starting point for this. The uniform and well-designed structure of the database allows very easy expansion, be it for newly discovered faults, additional geomanifestation types, or parameter updates of either part. In addition, as demonstrated in the GeoConnect³d project, the SF+GM approach is fully transferable to other study areas. This clears the way for a cost-efficient cross-border exploration of the subsurface with wins for both the academic world and common public (geoheritage, education, ...), and significantly contributes to a more data-supported outline for subsurface management. This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 731166. References Berberich, G., & Schreiber, U., 2013. GeoBioScience: Red Wood Ants as Bioindicators for Active Tectonic Fault Systems in the West Eifel (Germany). Animals, 3, 475-498. Griesshaber, E., O'Nions, R.K. & Oxburg, E.R., 1992. Helium and carbon isotope systematics in crustal fluids from the Eifel, the Rhine Graben and Black Forest, F.R.G. Chemical Geology, 99, 213-235. Mittelbach, G. & Siebert, S., 2014. Gutachten zur Festsetzung eines Heilquellenschutzgebietes für die Heilquellen (Große und Kleine Adlerquelle, Schützenhofquelle, Kochbrunnen, Salmquelle und Faulbrunnen) von Wiesbaden, Stadt Wiesbaden (WSG-ID 414-005), Wiesbaden, pp. 1-52. White, W.M., 2013. Chapter 12: Noble Gas Isotope Geochemistry, Isotope Geochemistry course notes. Cornell University.
Located in Library / RBINS Staff Publications 2021 OA
Techreport Reference Optimising the future Belgian offshore wind farm monitoring programme
Located in Library / RBINS Staff Publications
Article Reference Orbitally forced sequences and climate reconstruction around the Devonian–Carboniferous boundary, and the Hangenberg Extinction Event
Located in Library / RBINS Staff Publications
Article Reference Organic Matter Composition of Biomineral flocs and Its Influence on Suspended Particulate Matter Dynamics Along a Nearshore to Offshore Transect
The seasonal variation in concentration of transparent exopolymer particles (TEPs), particulate organic carbon (POC) and particulate organic nitrogen (PON) were investigated together with floc size and the concentration of suspended particulate matter (SPM) along the cross-shore gradient, from the high turbid nearshore toward the low-turbid offshore waters in the Southern Bight of the North Sea. Our data demonstrate that biophysical flocculation cannot be explained by these heterogeneous parameters, but requires a distinction between a more reactive labile (“fresh”) and a less reactive refractory (“mineral-associated”) fraction. Based on all data, we separated the labile and mineral-associated POC, PON, and TEP using a semi-empirical model approach. The model's estimates of fresh and mineral-associated organic matter (OM) show that great parts of the POC, PON, and TEP are associated with suspended minerals, which are present in the water column throughout the year, whereas the occurrence of fresh TEP, POC, and PON is restricted to spring and summer months. In spite of a constantly high abundance of total TEP throughout the entire year, it is its fresh fraction that promotes the formation of larger and faster sinking biomineral flocs, thereby contributing to reducing the SPM concentration in the water column over spring and summer. Our results show that the different components of the SPM, such as minerals, extracellular OM and living organisms, form an integrated dynamic system with direct interactions and feedback controls.
Located in Library / RBINS Staff Publications 2022
Article Reference Organic matter processing in a [simulated] offshore wind farm ecosystem in current and future climate and aquaculture scenarios
The rapid development of blue economy and human use of offshore space triggered the concept of co-location of ma- rine activities and is causing diverse local pressures on the environment. These pressures add to, and interact with, global challenges such as ocean acidification and warming. This study investigates the combined pressures of climate change and the planned co-location of offshore wind farm (OWF) and aquaculture zones on the carbon flow through epifaunal communities inhabiting wind turbines in the North Sea. A 13 C-labelled phytoplankton pulse-chase experi- ment was performed in mesocosms (4 m 3 ) holding undisturbed hard-substrate (HS) communities, natural sediment with infauna, and mobile invertebrate predators. Carbon assimilation was quantified under current and predicted future-climate conditions (+3 °C and −0.3 pH units), as well as a future-climate co-use scenario with blue mussel (Mytilus edulis) aquaculture. Climate change induced an increase in macrofaunal carbon assimilation as well as an organic enrichment of underlying sediments. Dynamic (non-)trophic links between M. edulis and other HS epifauna resulted in shifts among the species contributing most to the phytoplankton-derived carbon flow across climate scenar- ios. Increased inter- and intraspecific resource competition in the presence of M. edulis aquaculture prevented a large increase in the total assimilation of phytoplankton by HS fauna. Lower individual carbon assimilation rates by both mussels and other epifauna suggest that if filter capacity by HS epifauna would approach renewal by advection/ mixing, M. edulis individuals would likely grow to a smaller-than-desired commercial size. In the same scenario, ben- thic organic carbon mineralisation was significantly boosted due to increased organic matter deposition by the aqua- culture set-up. Combining these results with in situ OWF abundance data confirmed M. edulis as the most impactful OWF AHS species in terms of (total) carbon assimilation as well as the described stress responses due to climate change and the addition of bivalve aquaculture.
Located in Library / RBINS Staff Publications 2022
Article Reference C source code Organic matter processing in a [simulated] offshore wind farm ecosystem in current and future climate and aquaculture scenarios
Located in Library / RBINS Staff Publications 2023 OA