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Article Reference EJT editorial standard for the semantic enhancement of specimen data in taxonomy literature
This paper describes a set of guidelines for the citation of zoological and botanical specimens in the European Journal of Taxonomy. The guidelines stipulate controlled vocabularies and precise formats for presenting the specimens examined within a taxonomic publication, which allow for the rich data associated with the primary research material to be harvested, distributed and interlinked online via international biodiversity data aggregators. Herein we explain how the EJT editorial standard was defined and how this initiative fits into the journal’s project to semantically enhance its publications using the Plazi TaxPub DTD extension. By establishing a standardised format for the citation of taxonomic specimens, the journal intends to widen the distribution of and improve accessibility to the data it publishes. Authors who conform to these guidelines will benefit from higher visibility and new ways of visualising their work. In a wider context, we hope that other taxonomy journals will adopt this approach to their publications, adapting their working methods to enable domain-specific text mining to take place. If specimen data can be efficiently cited, harvested and linked to wider resources, we propose that there is also the potential to develop alternative metrics for assessing impact and productivity within the natural sciences.
Located in Library / RBINS Staff Publications 2019
Article Reference EKLIPSE: engaging knowledge holders and networks for evidence-informed European policy on biodiversity and ecosystem services
The aim of EKLIPSE is to develop a mechanism to inform European-scale policy on biodiversity and related environmental challenges. This paper considers two fundamental aspects of the decision-support mechanism being developed by EKLIPSE: 1) the engagement of relevant actors from science, policy and society to jointly identify evidence for decision making; and 2) the networking of scientists and other holders of knowledge on biodiversity and other relevant evidence. The mechanism being developed has the potential not only to build communities of knowledge holders but to build informal networks among those with similar interests in evidence, be they those that seek to use evidence or those who are building evidence, or both. EKLIPSE has been successful in linking these people and in contributing to building informal networks of requesters of evidence, and experts of evidence and its synthesis. We have yet to see, however, significant engagement of formal networks of knowledge holders. Future success, however, relies on the continued involvement with and engagement of networks, a high degree of transparency within the processes and a high flexibility of structures to adapt to different requirements that arise with the broad range of requests to and activities of EKLIPSE. key messages EKLIPSE develops a mechanism to inform policy on biodiversity and related environmental challenges. EKLIPSE operates at a European scale, bringing together policy-makers and knowledge holders from both science and society. EKLIPSE promotes the networking of scientists and other holders of knowledge on biodiversity and other relevant evidence.
Located in Library / RBINS Staff Publications 2018
Inbook Reference El Abadiya 2, A Naqada I Site near Danfiq, Upper Egypt
Located in Library / RBINS Staff Publications
Article Reference Empididae (Diptera) or dance flies of the Botanic Garden Jean Massart (Brussels-Capital Region, Belgium) with comments on Red Data Book status
Located in Library / RBINS Staff Publications 2023 OA
Article Reference Empidoid flies from Cabo Verde (Diptera, Empidoidea, Dolichopodidade and Hybotidae) are not only composed of Old World tropical species
Located in Library / No RBINS Staff publications
Article Reference Endemism in Inland Waters. In : LIKENS, G. (Ed.), Encyclopedia of Inland Waters
Located in Library / RBINS Staff Publications
Article Reference Endocranial morphology of Liaoceratops yanzigouensis (Dinosauria: Ceratopsia) from Early Cretaceous Jehol Biota of Liaoning in China
Located in Library / RBINS Staff Publications 2022
Article Reference Endocranial morphology of Palaeocene Plesiadapis tricuspidens and evolution of the early primate brain
Expansion of the brain is a key feature of primate evolution. The fossil record, although incomplete, allows a partial reconstruction of changes in primate brain size and morphology through time. Palaeogene plesiadapoids, closest relatives of Euprimates (or crown-group primates), are crucial for understanding early evolution of the primate brain. However, brain morphology of this group remains poorly documented, and major questions remain regarding the initial phase of euprimate brain evolution. Micro-CT investigation of the endocranial morphology of Plesiadapis tricuspidens from the Late Palaeocene of Europe—the most complete plesiadapoid cranium known—shows that plesiadapoids retained a very small and simple brain. Plesiadapis has midbrain exposure, and minimal encephalization and neocorticalization, making it comparable with that of stem rodents and lagomorphs. However, Plesiadapis shares a domed neocortex and downwardly shifted olfactory-bulb axis with Euprimates. If accepted phylogenetic relationships are correct, then this implies that the euprimate brain underwent drastic reorganization during the Palaeocene, and some changes in brain structure preceded brain size increase and neocortex expansion during evolution of the primate brain.
Located in Library / RBINS Staff Publications
Article Reference Endogenous toxins and the coupling of gregariousness to conspicuousness in Argidae and Pergidae sawflies
Located in Library / RBINS Staff Publications 2018
Article Reference Endosymbiont dominated bacterial communities in a dwarf spider
The microbial community of spiders is little known, with previous studies focussing primarily on the medical importance of spiders as vectors of pathogenic bacteria and on the screening of known cytoplasmic endosymbiont bacteria. These screening studies have been performed by means of specific primers that only amplify a selective set of endosymbionts, hampering the detection of unreported species in spiders. In order to have a more complete overview of the bacterial species that can be present in spiders, we applied a combination of a cloning assay, DGGE profiling and high-throughput sequencing on multiple individuals of the dwarf spider Oedothorax gibbosus. This revealed a co-infection of at least three known (Wolbachia, Rickettsia and Cardinium) and the detection of a previously unreported endosymbiont bacterium (Rhabdochlamydia) in spiders. 16S rRNA gene sequences of Rhabdochlamydia matched closely with those of Candidatus R. porcellionis, which is currently only reported as a pathogen from a woodlouse and with Candidatus R. crassificans reported from a cockroach. Remarkably, this bacterium appears to present in very high proportions in one of the two populations only, with all investigated females being infected. We also recovered Acinetobacter in high abundance in one individual. In total, more than 99% of approximately 4.5M high-throughput sequencing reads were restricted to these five bacterial species. In contrast to previously reported screening studies of terrestrial arthropods, our results suggest that the bacterial communities in this spider species are dominated by, or even restricted to endosymbiont bacteria. Given the high prevalence of endosymbiont species in spiders, this bacterial community pattern could be widespread in the Araneae order.
Located in Library / RBINS Staff Publications