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Article Reference Mitochondrial DNA diversity and evolution of the Pleistocene cave bear complex
Cave bears are among the most well known extinct Pleistocene mammals. Their biogeography and taxonomy, along with the factors that led to their extinction, have been subject to long-standing controversy. Here, we reconstruct the phylogeography as well as the temporal and spatial population dynamics of cave bears across their range using mitochondrial DNA control region sequences from 77 published as well as 65 new cave bear samples, Our analyses reveal a dramatic loss of genetic diversity in cave bear populations after 30,000 years before present and provide evidence for a range decline from east to west towards the onset of the last glacial maximum. Our results also suggest that the three major haplogroups within cave bears, which may correspond to distinct species, were previously more widespread, with relict populations in remote and alpine areas still harbouring haplotypes that have disappeared from most of their previous range. Applying a phylogenetic dating approach, we estimated the age of the oldest of our samples, originating from the Yana River region in north-eastern Siberia, to be around 178,000 years, which confirms a previous estimate of a Middle Pleistocene age based on its stratigraphic position. Our results extend our knowledge about the evolutionary history of cave bears, but they also show that to unravel the complexities of cave bear evolution future ancient DNA studies on this Pleistocene species will need to go beyond short mitochondrial DNA fragments, including full mitochondrial genomes as well as nuclear DNA sequences.
Located in Library / RBINS Staff Publications
Article Reference Canids as persons: Early Neolithic dog and wolf burials, Cis-Baikal, Siberia
Interpretations of dog burials made by ancient foraging groups have tended to be based upon our own relationships with such animals and modern western cosmological and ontological concepts. Osteological studies of early dogs often focus only on issues of taxonomy, and as a result very little is known about these animals’ life histories. Eastern Siberia has produced many Holocene dog burials, but these are typically not well described and the explanatory frameworks provided for them are very underdeveloped. Here we examine in detail two Cis-Baikal canid burials, one of a wolf and the other a dog, both in large Middle Holocene hunter-gatherer cemeteries. We link the mortuary treatment of these animals to other cultural practices, particularly the treatment of the human dead, and broader patterns in Northern human-animal relationships. This interpretive model is combined with detailed osteobiographies for the canids and contextual information for these and other dogs and wolves from Middle Holocene Cis- Baikal. It is argued that canids here were understood and treated in a variety of ways. We suggest that some animals with unique histories were known as distinct persons with ‘souls’ and because of this at death required mortuary rites similar to those of their human counterparts.
Located in Library / RBINS Staff Publications
Article Reference Isotopic evidence for dietary ecology of cave lion (Panthera (leo) spelaea) in North-Western Europe: prey choice, competition and implications for extinction
The prey choice of extinct cave lions Panthera spelaea was determined using bone collagen isotopic signatures in the Belgian Ardennes and the Swabian Jura between 40,000 and 25,000 years ago as well as in the Late-glacial of the northwestern Alp foreland and of the Paris Basin. More than 370 specimens of large carnivorous and herbivorous mammals from 25 sites coeval with cave lion were analyzed. The isotopic results point to an individualistic prey choice for cave lions, with some individuals more oriented on reindeer and others on young cave bears. The isotopic signatures and therefore dietary choice of cave lions did not overlap with those of cave hyenas, indicating competitive exclusion between the large predators. The most recent western European cave lions seem to have been consuming mainly reindeer until the local extirpation of this prey species, which coincides chronologically with their own extinction. This restricted prey choice may be involved in the extinction of this large predator in Western Europe.
Located in Library / RBINS Staff Publications
Inproceedings Reference Virtual biomechanical analysis of the lower limbs of a Neandertal
Located in Library / RBINS Staff Publications
Article Reference A vision and strategy for the virtual physiological human in 2012 and beyond
European funding under Framework 7 (FP7) for the virtual physiological human (VPH) project has been in place now for 5 years. The VPH Network of Excellence (NoE) has been set up to help develop common standards, open source software, freely accessible data and model repositories, and various training and dissemination activities for the project. It is also working to coordinate the many clinically targeted projects that have been funded under the FP7 calls. An initial vision for the VPH was defined by the FP6 STEP project in 2006. In 2010, we wrote an assessment of the accomplishments of the first two years of the VPH in which we considered the biomedical science, healthcare and information and communications technology challenges facing the project (Hunter et al. 2010 Phil. Trans. R. Soc. A 368, 2595–2614 (doi:10.1098/rsta.2010.0048)). We proposed that a not-for-profit professional umbrella organization, the VPH Institute, should be established as a means of sustaining the VPH vision beyond the time-frame of the NoE. Here, we update and extend this assessment and in particular address the following issues raised in response to Hunter et al.: (i) a vision for the VPH updated in the light of progress made so far, (ii) biomedical science and healthcare challenges that the VPH initiative can address while also providing innovation opportunities for the European industry, and (iii) external changes needed in regulatory policy and business models to realize the full potential that the VPH has to offer to industry, clinics and society generally.
Located in Library / RBINS Staff Publications
Article Reference La détermination du sexe grâce à la méthode probabalistic diagnosis dans un environnement virtuel
The hip bone is one of the most reliable indicators of sex in the human body due to the fact it is the most dimorphic bone. Probabilistic Sex Diagnosis (developed by Murailet al., 2005) is a method based on a worldwide hip bone metrical database and relies on the actual physical bone for analysis. Sex is determined by comparing specific measurements taken from each specimen using sliding calipers and computing the probability of the specimens being female or male. In forensic science it is sometimes not possible to sex a body due to corpse decay or injury. Skeletinization and dissection of a body is a laborious process and desecrates the body. The current study aimed to see if it was possible to virtually utilise the DSP method to avoid this process. Forty-nine innominate bones of unknown sex were obtained from ULB. Bones were analysed by two researchers using the manual DSP method and a good correlation was found between researchers. CT scans of available bones were analysed to obtain three-dimensional (3D) virtual models using a commercially available software (Amira, www.amiravis.com). Available models were imported into a customized software programme called lhpFusionBox (developed at ULB from the MAF open-source library). lhpFusionBox is an advanced musculo-skeletal software which includes many operations relevant to Biomechanics. It also enables distances to be measured via virtually- palpated bony landmarks. DSP measurements were then obtained from the located bony landmarks. There was 100% accuracy between the manual and virtual DSP analysis. To further test the method 30 virtual bones of known sex were analysed (researchers had no prior knowledge of sex before analysis). There was found to be a 97% accuracy rate with only one bone leading to a wrong determination. These
Located in Library / RBINS Staff Publications
Article Reference A GIS-based methodology for creating 3D geological models in sedimentary environment: application to the subcrop of Brussels
In order to meet the requirements established by the European Directive (2006/118/EC) on the groundwater protection, the Geological Survey of Belgium (GSB) has started a new Geographic Information System (GIS) project called Hydrobrux. The aim is to create a thorough three-dimensional geological model of the subcrop of Brussels. The latter will be used to produce a hydrogeological model of the Brussels Formation aquifer composed of sands and covering 126 km2 in the eastern part of the Brussels-Capital Region and subsequent deeper aquifers (Palaeocene and Upper Cretaceous). The GIS 3D model is built by superposition of interpolated surfaces, which represent the top surface of each modelled geological layers. Eleven top surfaces are generated independently and are based on the interpolation of 5169 points. This high density of information is provided by 2426 boreholes, water wells, outcrops, cone penetration tests (CPT) and other sources of stratigraphic data that were collected and structured in a relational database under Microsoft Access. The data were exported to ArcGIS for the geostatistics (2D mapping) and validation parts and subsequently to ArcScene for the construction and the visualisation of the 3D model.
Located in Library / RBINS Staff Publications
Article Reference Prionus antonkozlovi n. sp. de Chine (Coleoptera, Cerambycidae, Prioninae)
Located in Library / RBINS Staff Publications 2021
Article Reference Biology and fisheries of the spotted flounder (Citharus linguatula) caught by multiple gears with partial spatiotemporal overlaps
Obtaining data to study fish biology can be a challenge if a stock is fished by a variety of gears with different effort units and different selectivity, particularly if these gears only partially overlap in space and time. In this work, we attempted to study the biology of the spotted flounder Citharus linguatula in the Patraikos Gulf and the adjacent central Ionian Sea (eastern Mediterranean) and to evaluate the current fisheries management. We characterized age composition and growth, length-at-maturity, and catch-perunit- effort (CPUE) of spotted flounder from the catches of bottom trawls, gillnets and trammel nets for the period autumn 2013–2014. Variation of fish total length, gonadosomatic index, hepatosomatic index and condition factor was analyzed using generalized additive models (GAMs) with regard to sex, date, fishing gear and depth.We also modeled CPUE fluctuations of each gear by date, depth, longitude and latitude using GAMs. Fish age ranged from 1 to 5 years. A slightly allometric growth was documented with females attaining larger sizes than males. Length-at-maturity was 163mm for females and 169mm for males. The seasonal change of gonad maturity stages and the gonadosomatic index indicated spawning in late summerautumn. Changes in length frequencies indicated that recruitment to the fisheries occurred in late springearly winter in shallow depth (<40 m). The catch composition of trawls and the CPUE model results suggested that the selectivity of this gear should be regulated to reduce catching immature individuals of spotted flounder. The results further indicated that the seasonal trawl closure of the Patraikos Gulf contributes to reduce catching juveniles.
Located in Library / RBINS Staff Publications 2017
Article Reference Redescription of Cichlidogyrus tiberianus Paperna, 1960 and C. dossoui Douëllou, 1993 (Monogenea: Ancyrocephalidae), with special reference to the male copulatory organ
The flatworms of the genus Cichlidogyrus Paperna, 1960 (Monogenea: Ancyrocephalidae) are gill parasites of freshwater fish, affecting predominantly the family Cichlidae. Cichlidogyrus tiberianus Paperna, 1960 and Cichlidogyrus dossoui Doue¨llou, 1993 are among the most widely distributed species of the genus, occurring in several African river basins and infecting many different host species, including the economically important Nile tilapia Oreochromis niloticus (Linnaeus) and redbreast tilapia Coptodon rendalli (Boulenger). Despite their wide distribution, C. tiberianus and C. dossoui have so far been studied only by light microscopy. In this paper they are redescribed on the basis of scanning electron microscopy of newly-collected material. The new material was obtained from redbreast tilapia caught in the Luapula River (D. R. Congo). The haptoral sclerites and genitalia are redescribed and illustrated in detail. Special attention is given to the complex morphology of the male copulatory organ.
Located in Library / RBINS Staff Publications 2017