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Lessons from the calibration and sensitivity analysis of a fish larval transport model
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ABSTRACT: Numerous fish populations show strong year-to-year variations in recruitment. The early life stages play a crucial role in determining recruitment and dispersal patterns. A helpful tool to understand recruitment and dispersal involves simulations with a Lagrangian transport model, which results from the coupling between a hydrodynamic model and an individual-based model. Larval transport models require sound knowledge of the biological processes governing larval dispersal, and they may be highly sensitive to the parameters selected. Various assumptions about larval traits, behaviour and other model parameters can be tested by comparing simulation results with field data to identify the most sensitive parameters and to improve model calibration. This study shows that biological parameterization is more important than inter-annual variability in explaining the year-to-year differences in larval recruitment of common sole in the North Sea and the eastern English Channel. In contrast, year-to-year variability of connectivity leads to higher variability than changes in the biological parameters. The most influential parameters are pelagic larval duration, spawning period and mortality. Calibration over a 12 yr recruitment survey shows that a scenario with low mortality associated with a long larval duration and behaviour involving nycthemeral and tidal migration best reproduces the observations. This research provides insights into factors influencing fish dispersal and recruitment, suggesting a strategy for enhancing the accuracy of models in upcoming studies. The study supports the improvement of larval dispersal modelling by incorporating an easily applicable sensitivity analysis for both calibration and validation. Incorporating sensitivity analyses enhances larval dispersal models, providing performing tools that can contribute to informed fisheries management and understanding of recruitment variability.
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RBINS Staff Publications 2024
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The transition between coastal and offshore areas in the North Sea unraveled by suspended particle composition
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Identifying the mechanisms that contribute to the variability of suspended particulate matter concentrations in coastal areas is important but difficult, especially due to the complexity of physical and biogeochemical interactions involved. Our study addresses this complexity and investigates changes in the horizontal spread and composition of particles, focusing on cross-coastal gradients in the southern North Sea and the English Channel. A semi-empirical model is applied on in situ data of SPM and its organic fraction to resolve the relationship between organic and inorganic suspended particles. The derived equations are applied onto remote sensing products of SPM concentration, which provide monthly synoptic maps of particulate organic matter concentrations (here, particulate organic nitrogen) at the surface together with their labile and less reactive fractions. Comparing these fractions of particulate organic matter reveals their characteristic features along the coastal-offshore gradient, with an area of increased settling rate for particles generally observed between 5 and 30 km from the coast. We identify this area as the transition zone between coastal and offshore waters with respect to particle dynamics. Presumably, in that area, the turbulence range and particle composition favor particle settling, while hydrodynamic processes tend to transport particles of the seabed back towards the coast. Bathymetry plays an important role in controlling the range of turbulent dissipation energy values in the water column, and we observe that the transition zone in the southern North Sea is generally confined to water depths below 20 m. Seasonal variations in suspended particle dynamics are linked to biological processes enhancing particle flocculation, which do not affect the location of the transition zone. We identify the criteria that allow a transition zone and discuss the cases where it is not observed in the domain. The impact of these particle dynamics on coastal carbon storage and export is discussed.
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RBINS Staff Publications 2024 OA
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Espaces verts comme une alternative de conservation de la biodiversité en villes : le cas des fourmis (Hyménoptère : Formicidae) dans le district d’Abidjan (Côte d’Ivoire)
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Objectif: Cette étude vise à évaluer le rôle des espaces verts dans la préservation de la biodiversité dans le district d’Abidjan (Côte d’Ivoire). Les fourmis ont été utilisées comme des indicateurs biologiques afin d’examiner l’influence des activités anthropiques sur la biodiversité de ces habitats localisés dans la matrice urbaine. Méthodologie et résultats : Les fourmis ont été collectées à l’aide d’appât de thon et du protocole ALL (pièges fosses et Winkler) dans trois types d’espaces verts (espaces verts publics, jardins botaniques et le Parc National du Banco). Les résultats indiquent que les espaces verts sont pollués (pourcentage de nuisance compris entre 1,7 % et 28,8 %) et illégalement occupés (pourcentage d’occupation compris entre 1,08 % à 52,3 %) par les activités humaines. Ces milieux abritent toutefois une faune de fourmis riche avec 176 espèces collectées. De plus, les jardins botaniques et les espaces verts publics partagent 8,51 % et 42,55 % des espèces de fourmis avec le Parc National du Banco, malgré leur faible connectivité à cet habitat naturel. Conclusion et application : Cette étude suggère que les espaces verts du district d’Abidjan présentent des atouts de conservation de la biodiversité, en particulier les fourmis. Toutefois, l’occupation de ces milieux par les activités commerciales conduit à leur dégradation progressive et à la disparition des communautés animales et végétales. Les résultats de cette étude devraient interpeller les décideurs à définir une politique de gestion des espaces verts et parcs urbains afin de rehausser leur valeur de conservation de la biodiversité en ville.
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RBINS Staff Publications 2018
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Use of Soil and Litter Ants (Hymenoptera: Formicidae) as Biological Indicators of Soil Quality Under Different Land Uses in Southern Rwanda
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The use of soil and litter arthropods as biological indicators is a way to assess environmental changes, where ant species in particular may serve as important indicators of soil quality. This study aimed at relating the abundance of soil and litter ant species to soil parameters under different tree species, both native and exotic, and varieties of coffee and banana plantations. Variations were found in soil physicochemical parameters. A total of 30 species belonging to 14 genera, and four subfamilies, the Formicinae, Dorylinae, Myrmicinae, and Ponerinae were identified. Higher abundance was found in coffee plantations compared to banana plantations, exotic and native tree species. Species of Camponotus cinctellus and Odontomachus troglodytes occurred in all land uses which is a sign of tolerance to a wide range of soil properties. In addition, these species, together with Myrmicaria SP02, Phrynoponera gabonensis, Camponotus SP06, Myrmicaria opaciventris, Pheidole SP03, Tetramorium simillimum, Pheidole SP01, and Tetramorium laevithorax were not strongly correlated with soil physicochemical parameters. Species of Pheidole SP02 and Camponotus SP05 were restricted to specific soil physicochemical properties, while species of Tetramorium zonacaciae and Bothroponera talpa discriminated between native tree species, coffee plantations, soil organic carbon, sandy soil texture, and aggregate stability. We concluded that these ant species can differently indicate the soil quality depending on the land use. We recommended further studies in order to generalize these findings
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RBINS Staff Publications 2018
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Short-term changes in the structure of ant assemblages in a Guinean savanna under differing fire regimes at Lamto Scientific Reserve, Côte d’Ivoire
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To maintain savanna vegetation, mid-seasonal fire has been applied since 1961 in the Lamto Savanna (Côte d’Ivoire). However, this prescribed fire has not impeded tree encroachment during recent years, nor have its effects on insect assemblages been documented. Also the impact of tree intrusion on insect assemblages is poorly studied in savanna. To prevent tree density increasing, a change in fire regime might be a solution. In this study, we examined the effect of different fire regimes (early, mid-seasonal and late fires) on leaf-litter ant assemblages in order to suggest appropriate measures for preventing tree invasion without having an effect on insect communities. Sampling was implemented by combining pitfall trapping and leaf-litter sampling before and after three different fire regimes, early, mid-seasonal and late fires. While the ant species richness declined after the passage of early and mid-seasonal fires, significantly more species were found in the burnt savanna after the late fire. However, the losses or gains of species due to different fire regimes did not cause severe changes in the ant species composition. Of the functional groups identified, only the generalists and specialist predators were respectively strongly affected by the early and mid-seasonal fires, certainly due to micro-habitat modification. Based on the trends observed in the present study, we suggest sampling other invertebrate fauna in similar savanna plots to find out if other insect groups have similar reactions to the applied fire regimes.
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RBINS Staff Publications 2018
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FROM THEORY TO PRACTICE: A PHOTOGRAPHIC INVENTORY OF MUSEUM COLLECTIONS TO OPTIMIZE COLLECTION MANAGEMENT
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The digitization of museum specimens is a key priority in the Digital Era. Digital databases help to avoid unnecessary manipulation hazards to delicate collections, increase their accessibility to third party researchers, and contribute to the ongoing documentation of global biodiversity. Time, workforce and the need of specialized infrastructures limit the processing of the vast number of specimens in natural history collections. Cheaper, easy-to-use methods and volunteer programs are developing quickly to help bridge the gap. We present the results of combining citizen science for the digitization of an entomological collection in conjunction with the cooperation of a taxonomic expert for the remote identification of samples. In addition, we provide an assessment of the avoided monetary costs and the time needed for each step of the process. A photographic inventory of specimens belonging to the leaf beetle genus Calligrapha was compiled by volunteers using a low-cost compact camera and the species were identified using these images. Using digital photographs allowed for a rapid screening of specimens in the collection and resulted in an updated taxonomic identification of the Calligrapha collection at the Royal Belgian Institute of Natural Sciences. The pictures of the specimens and their original labels, as well as the new information from this endeavor were placed in an online public catalogue. This study demonstrates a worked example of how digitization has led to a practical, useful outcome through cooperation with an end user and highlights the value of museum collection digitization projects
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RBINS Staff Publications 2018
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IMPACT OF ANTS ON THE GROWTH AND PRODUCTIVITY OF LAMTO SAVANNA PERENNIAL GRASSES (COTE D’IVOIRE)
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Lamto savanna soil known to have low agronomic value paradoxically has one of the highest grasses biomass productions in the world. During recent surveys, ant nest were encountered under some grass tufts and it as suggested that ants are able to influence the availability of resources for these grasses and also other organisms. An interaction is suspected between these savanna grass tufts and their associated ants. Three grasses species Andropogon schirensis, Hyparrhenia diplandra and Loudetia simplex were chosen to inventory ant communities associated with grass tufts and to assess the influence of ant communities on growth and productivity of perennial grasses. Three study sites were chosen and each was subdivided in two experimental plots of 2500 m². By systematic digging out method we were collected 38 ant species under grass tufts. They belong to 19 genera and 7 sub-families. Lamto herbaceous stratum was dominated by Camponotus acvapinensis. Diameter measures of grass tufts base at ground level, have allowed establishing the link between the size of ant nest and grass tufts size. Pearson coefficient r ranged no correlation between the size of ants nest and grass tufts size. The association rate with ants of one of the grasses Hyparrhenia diplandra was greater than for two other grasses studied Andropogon schirensis and Loudetia simplex (54.208 % versus 49.433 %, and 38.496 % respectively). Parameters such as grasses height, diameter (at ground level, and 10 cm above), dry biomass and seeds production were assessed. The results showed that Hyparrhenia diplandra with ant nest recorded the best results of growth and productivity. Association with ants nest is beneficial for the growth and productivity of Lamto perennial grasses.
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RBINS Staff Publications 2018
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Investigating urban ant community (Hymenoptera: Formicidae) in port cities and in major towns along the border in Côte d’Ivoire: a rapid assessment to detect potential introduced invasive ant species
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Objective: This study aimed at examining ant communities of port and border cities in order to identify introduced and potential invasive ant species and microhabitats likely to contribute to the spread of these ant species. Therefore, the sampling design are linear transects of 200 metres on which ants were collected using tuna baits at 15, 30, 45 and 60 minutes in the two port cities of Abidjan and San Pedro, and seven cities that are Man, Touba, Odienne, Ferkéssedougou, Bouna, Bondoukou and Abengourou located near the borders of Côte d’Ivoire. The results showed 83 ant species including 9 potential introduced or invasive ant species. These invasive ants contributed importantly to the ant assemblage in port cities (23.95±2.7 % of total richness and 37±6.1 % of total abundance) and border cities (20.17±4.7 % / 30.6±7 %). In addition two notorious invaders, Solenopsis geminata (Fabricius, 1804) (Tropical fire ant) and Pheidole megacephala (Fabricius, 1793) (Big-headed ant) were detected during this study. The results also indicated that potential introduced or invasive ant species were mostly detected in microhabitats where human activities are uninterrupted such port zones, markets, domestic streets and residential. Conclusion: In the end, this study has shown that ant communities in port and border cities harbour invasive potential ant species, particularly microhabitats characterized by high human activities such as port areas, markets, domestic streets and residential areas.
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RBINS Staff Publications 2018
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Deriving pre-eutrophic conditions from an ensemble model approach for the North-West European seas
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RBINS Staff Publications 2023
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On the relative role of abiotic and biotic controls on channel network development: insights from scaled tidal flume experiments
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Tidal marshes provide highly valued ecosystem services, which depend on variations in the geometric properties of the tidal channel networks dissecting marsh landscapes. The development and evolution of channel network properties are controlled by abiotic (dynamic flow-landform feedback) and biotic processes (e.g., vegetation-flow-landform feedback). However, the relative role of biotic and abiotic processes, and under which condition one or the other is more dominant, remains poorly understood. In this study, we investigated the impact of spatio-temporal plant colonization patterns on tidal channel network development through flume experiments. Four scaled experiments mimicking tidal landscape development were conducted in a tidal flume facility: two control experiments without vegetation, a third experiment with hydrochorous vegetation colonization (i.e., seed dispersal via the tidal flow), and a fourth with patchy colonization (i.e., by direct seeding on the sediment bed). Our results show that more dense and efficient channel networks are found in the vegetation experiments, especially in the hydrochorous seeding experiment with slower vegetation colonization. Further, an interdependency between abiotic and biotic controls on channel development can be deduced. Whether biotic factors affect channel network development seems to depend on the force of the hydrodynamic energy and the stage of the system development. Vegetation-flow-landform feedbacks are only dominant in contributing to channel development in places where intermediate hydrodynamic energy levels occur and mainly have an impact during the transition phase from a bare to a vegetated landscape state. Overall, our results suggest a zonal domination of abiotic processes at the seaward side of intertidal basins, while biotic processes dominate system development more towards the landward side.
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RBINS Staff Publications 2024
