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Webpublished Reference How does landscape vegetation configuration regulate local channel initiation in rapidly expanding marsh?
Biogeomorphic interactions between tidal channels and marsh plants play a crucial role in enhancing coastal resilience to climate change. Previous studies linking the channel formation with vegetation dynamics predominantly focused on the early initiation, characterized by local-scale plant-flow feedbacks. However, the influence of rapid changes in landscape-scale vegetation pattern on the channel initiation remains poorly understood, especially in micro-tidal system. In this study, we investigated this relationship through biogeomorphic modeling combined with the analysis of satellite images in a rapidly expanding marsh in China under Spartina alterniflora invasion. The satellite images demonstrated the increase in drainage density and the decrease in unchanneled path length following plant encroachment. Our modeling results showed that local flow acceleration between vegetation patches was insufficient to initiate channels rapidly before the merging of isolated patches under micro-tidal conditions. With plant expansion, the continuous marsh caused landscape flow diversion from homogenous platform flow to concentrated channel flow, which promoted evident tributary channel initiation in the landward marsh zone. The vegetation removal scenarios further highlighted that the flow divergence from adjacent platforms due to the spatial heterogeneity in plant configuration amplified the magnitude of local hydrodynamics and further channel incision. Our findings emphasize that the initiation of tidal channels not only depends on local plant-flow interaction but is largely driven by landscape vegetation configuration under micro-tidal conditions.
Located in Library / RBINS Staff Publications 2024
Webpublished Reference Dense Vegetation Hinders Sediment Transport Towards Saltmarsh Interiors
The resilience of saltmarshes mainly depends on their ability to gain elevation by sediment accretion to keep pace with sea level rise, and tidal channels play a crucial role in the supply of sediments towards their interiors. While feedbacks between vegetation and geomorphology are increasingly recognized as key drivers shaping a variety of tidal channel network structures, the resulting impact on long-term sediment accretion over the vegetated platforms remains poorly studied. At the plant-scale, vegetation facilitates sediment accretion by trapping mineral sediments and producing organic matter. At the landscape-scale, vegetation promotes the formation of dense, branching, and meandering tidal channel networks, which reduce the distance between saltmarsh interiors and their source of suspended sediments. In this presentation, we use a biogeomorphic model validated against data to reveal two mechanisms by which vegetation also hinders sediment transport towards saltmarsh interiors. First, vegetation concentrates tidal flow and sediment transport inside channels, which reduces sediment availability for deposition on saltmarsh platforms. Secondly, vegetation enhances sediment deposition close to channels, which deprives saltmarsh interiors of suspended sediments, creating levee-depression patterns and leading to pond formation. In the present context of accelerating sea level rise and human-induced decrease of sediment supply, our findings suggest that saltmarshes are more vulnerable than previously thought.
Located in Library / RBINS Staff Publications 2024
Webpublished Reference Ecosystem Modeling in the North Sea
The North Sea is an epeiric sea on the European continental shelf, which connects to the Atlantic Ocean through the English Channel in the South and the Norwegian Sea in the North. It hosts key north European shipping lanes, and it is a major fishery and a rich source of energy resources, including wind and wave power. Here we present a multi-year effort at developing a modeling infrastructure to support research in marine ecology and biogeochemistry in such highly, anthropogenically impacted system, and allow stakeholders taking informed decisions to sustainably manage its valuable resources. Our approach is fully open-source and mainly based on the numerical model COHERENS to simulate hydrodynamical and biogeochemical processes in three spatial dimensions and time. Our model is specifically validated against relevant in situ data in view of its main applications, for which it provides a large-scale virtual laboratory. For example, our model is used to investigate the impact of floating solar panel farms on primary production, but also to assess the efficiency of enhanced silicate weathering to serve as negative emission technology.
Located in Library / RBINS Staff Publications 2023
Webpublished Reference North Sea Hydrodynamics With Nested Models
The North Sea is an epeiric sea on the European continental shelf, which connects to the Atlantic Ocean through the English Channel in the South and the Norwegian Sea in the North. It hosts key north European shipping lanes, and it is a major fishery and a rich source of energy resources, including wind, wave and solar power. Here we present a nested hydrodynamics model that is calibrated against in situ data for the year 2009, and validated for the years 2010, 2011 and 2015, which present a large range of contrasting North Atlantic Oscillation (NAO) indices. Our results are openly available and provide 10+ years of hydrodynamics data (sea surface elevation, sea water velocity, potential temperature and salinity) with a resolution of 30 arcseconds in the Southern Bight of the North Sea, and 2 arcminutes elsewhere. With our model and resulting dataset, we aim at supporting marine research and policy in a highly, anthropogenically impacted system, allowing stakeholders to take informed decisions to sustainably manage its valuable resources.
Located in Library / RBINS Staff Publications 2024
Webpublished Reference Contrasting saltmarsh vegetation impacts under increasing sea level rise rates
The resilience of saltmarshes mainly depends on their ability to gain elevation by sediment accretion to keep pace with sea level rise. While vegetation is known to facilitate sediment accretion at the plant scale by trapping mineral sediments and producing organic matter, the long- term impact at the landscape scale is still poorly understood. Here we use the biogeomorphic model Demeter to reveal contrasting vegetation impacts on spatial patterns of sediment accretion under different sea level rise regimes. Under contemporary sea level rise rates (2-10 mm/yr), vegetation inhibits sediment transport from tidal channels to platform interiors and creates levee- depression patterns. Hence, intertidal platforms accrete slower with vegetation than without, but this trend attenuates with increasing sea level rise rate, as water depth increases, and vegetation drag decreases. Under extreme sea level rise rate (20 mm/yr), platform interiors don’t keep up and turn into open water, while vegetation allows to preserve intertidal levees. Our results help to better understand some basic biophysical mechanisms that will control the fate of coastal wetlands under global climate change.
Located in Library / RBINS Staff Publications 2024
Inproceedings Reference A comparison of bivalve, gastropod and fish otolith stable isotope profiles from the Aalter Sands, early Eocene southern North Sea Basin
Located in Library / RBINS Staff Publications 2024
Article Reference The “Key” to Bringing DNA Collections to the Next Level: A DiSSCo Flanders Working Group Product
The DiSSCo (Distributed System of Scientific Collections) Flanders consortium, with one of the set goals being ``maturing'' (i.e., optimizing the management of) and unlocking (i.e., publishing) their DNA collections, identified 1) the need for actively sharing best practices on the management of DNA collections; and 2) a need for guidance on how to bring theory into practice.During the DiSSCo Flanders project, a DNA collection working group was created. The working group is open to all biodiversity-related DNA collections associates in Belgium, including those in diverse roles such as researchers, lab technicians, collection managers and data managers. Around 50 people from 13 organizations are currently participating. Members can be passively (reading only) or actively (joining events) engaged. The strength, as well as one of the challenges, of the DiSSCo Flanders community is that the natural science collections are created and managed in different organizational contexts: universities, museum institutes and both governmental and non-governmental research organizations. This translates to a variety of collection management decisions and structures such as: decentralized or centralized; cold or room temperature storage; managed by an appointed curator or by a lab technician.The working group organizes meetings and workshops, tours of each other's collections, and shares a mailing list and an online document space. As its principal output, the group has co-created: “The key to bringing DNA collections to the next level” (Veltjen et al. 2024) with two main results: the ``Challenges'' and the “Key”.The ``Challenges'' is a list of 23 challenges applicable to DNA collection management. For example, challenge 8: ``Select or customise collection management systems to meet the needs of DNA collections''. They are intended to spark debate and give focus to the second output: the ``Key.'' The ``Key'' lists seven yes/no questions:Do you have an up-to-date overview of all direct, internal stakeholders of the institute’s DNA collection and are you involving them in the (current) intent to “bring the DNA collection to the next level”?Is preserving a DNA collection within the scope of the institute? And is the DNA collection officially recognized within the institute?Do you have, on paper, a clear description of the scope of the DNA collection?Have you outlined the current overarching workflow of the DNA collection?Have you been able to establish your starting level on the ``DNA collection maturation chart'' and is the assessment properly logged?Level up, one level at a time, and log the process. Have you reached all of the goals in level 3 on the ``DNA collection maturation chart''?Do you have a re-evaluation strategy for your DNA collection?The ``DNA collection maturation chart'' has 11 categories (rows), three levels (columns) and 33 goals (see Table 1 in Veltjen et al. 2024). The Key provides 18 guidance chapters, which give in depth information, literature and user experiences (Suppl. material 2 in Veltjen et al. 2024).The Key is a specialized tool for DNA collections. It facilitates a standardized and holistic approach, allowing both a helicopter view of the maturation process and close-up view of specific goals. The working group aims to test the Key, whereby the process of ``leveling up'' is embedded in a community setting: sharing ambitions, setbacks, changes of plans and success stories. The output is ready in its first version. It is published as a reviewable publication, allowing post-publication peer review (Veltjen et al. 2024). The works are expected to evolve through time, depending on user feedback and user experiences.The working group and co-created output are positive examples of how a local community—sometimes managing smaller, or less conspicuous types of natural science collections—can work together and use their unique perspectives, experiences and needs to contribute to the international natural science collection and biobanking communities.
Located in Library / RBINS Staff Publications 2024
Article Reference infraFADA: Upgrading the taxonomic backbone of global freshwater animal biodiversity research infrastructures
The current Freshwater Animal Diversity Assessment (FADA) comprises an extensive set of global taxa lists for freshwater animal groups. At present, more than 125 thousand described freshwater animal species in more than 11 thousand genera have been documented. However, taxonomy is a living scientific discipline, where new taxa are continuously being described, and existing taxa are being placed in new taxonomic positions. Therefore, after a period of relative inactivity, the BELSPO (Belgian Science Policy) project “infraFADA” (2023-2026) re-establishes the global FADA consortium of taxonomic experts, so that all taxa lists will be brought up to date, both technically and in terms of content. infraFADA will develop a living, updated, and global FADA database, fully in open access and according to the FAIR principles. The infraFADA database is intended for use and consultation by the scientific freshwater community, as well as for interested stakeholders, for example, freshwater ecosystem managers, biodiversity conservationists, and others. Most importantly, FADA will also serve as a taxonomic backbone for other global biodiversity data infrastructures, such as the Catalogue of Life (CoL), the Global Biodiversity Information Facility (GBIF), the Freshwater Information Platform (FIP), and others. As such, FADA will provide a digital and living heritage of freshwater data, building bridges between science and society and helping to sustainably maintain freshwater resources.
Located in Library / RBINS Staff Publications 2024
Inproceedings Reference Integrated taxonomic-taphonomic investigations of a complex late Pleistocene mollusc fauna: a case study from Zeebrugge
Located in Library / RBINS Staff Publications 2024
Inproceedings Reference To colour or not to colour: colour patterns and pigments in invertebrates from the Palaeozoic of Belgium
Almost nothing is known about the evolution of shell colour in invertebrates. This is largely due to the ultra-rarity of fossils in which colour patterns and pigments are preserved and immediately visible, and therefore easy to identify, especially when these are hundreds of millions of years old. This hampers our understanding of the role and function of colour in extinct animals, their ecology, mode of life, interactions, development, and evolution. A good example for this ultra-rarity is the Palaeozoic of Belgium, world-renowned for its exquisitely preserved fossils of the Devonian and Carboniferous, enabling to document major transitions in ecosystem dynamics and the evolution of life on Earth (e.g. nekton revolution, terrestrialisation, major climate changes, anoxic events, biodiversity crises) but from which only a few cephalopod, bivalve and gastropod mollusc and brachiopod shells were historically documented preserving coloured traces (mostly by L.-G. de Koninck and P. de Ryckholt, mid to late 19th century). However, recently, it was discovered that many more specimens preserve these traces, in particular those from Tournaisian–Viséan shallow marine reef environments, allowing to investigate its occurrence in different evolutionary lineages of marine invertebrates exactly during one of the main periods of revolution in geologic history. In Brain project B2/P233/P2 nicknamed COLOURINPALAEO financed by Belspo, after gathering all the specimens available in the main Belgian collections, we use different techniques (multispectral photogrammetry and spectro-imaging) to better visualise the preserved colour patterns and pigments. Furthermore, advanced spectroscopic techniques, namely Raman micro-probe spectroscopy, synchrotron trace elemental mapping and absorption spectroscopy, are used to identify the chemical signature of the pigments as well as their mode and pathways of preservation. Some of the first results on this multidisciplinary study on a unique set of Belgian fossils will be presented.
Located in Library / RBINS Staff Publications 2024