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Article Reference Ancestors of domestic cats in Neolithic Central Europe: Isotopic evidence of a synanthropic diet
Most of today’s domesticates began as farm animals, but cat domestication took a different path. Cats became commensal of humans somewhere in the Fertile Crescent, attracted to early farmers’ settlements by rodent pests. Cat remains from Poland dated to 4,200 to 2,300 y BCE are currently the earliest evidence for the migration of the Near Eastern wildcat to Central Europe. Tracking the possible synanthropic origin of that migration, we used stable isotopes to investigate the paleodiet. We found that the ecological balance was already changed due to the expansion of Neolithic farmlands. We conclude that among the Late Neolithic Near Eastern wildcats from Poland were free-living individuals, who preyed on rodent pests and shared ecological niches with native European wildcats.Cat remains from Poland dated to 4,200 to 2,300 y BCE are currently the earliest evidence for the migration of the Near Eastern cat (NE cat), the ancestor of domestic cats, into Central Europe. This early immigration preceded the known establishment of housecat populations in the region by around 3,000 y. One hypothesis assumed that NE cats followed the migration of early farmers as synanthropes. In this study, we analyze the stable isotopes in six samples of Late Neolithic NE cat bones and further 34 of the associated fauna, including the European wildcat. We approximate the diet and trophic ecology of Late Neolithic felids in a broad context of contemporary wild and domestic animals and humans. In addition, we compared the ecology of Late Neolithic NE cats with the earliest domestic cats known from the territory of Poland, dating to the Roman Period. Our results reveal that human agricultural activity during the Late Neolithic had already impacted the isotopic signature of rodents in the ecosystem. These synanthropic pests constituted a significant proportion of the NE cat’s diet. Our interpretation is that Late Neolithic NE cats were opportunistic synanthropes, most probably free-living individuals (i.e., not directly relying on a human food supply). We explore niche partitioning between studied NE cats and the contemporary native European wildcats. We find only minor differences between the isotopic ecology of both these taxa. We conclude that, after the appearance of the NE cat, both felid taxa shared the ecological niches.
Located in Library / RBINS Staff Publications 2020
Article Reference Spiders in Galapagos – diversity, biogeography and origin
Located in Library / RBINS Staff Publications 2020
Inproceedings Reference Tracing ancient DNA of Foraminifera in tsunami deposits (GEN-EX)
1. Background Tsunami deposits provide information on the long-term frequency-magnitude patterns of events, which may not be covered by the historical and instrumental record. Such information is crucial for the assessment of coastal hazards and mitigation measures against the loss of life and assets. In order to identify tsunami deposits in the coastal sedimentary record and to infer tsunami characteristics, a wide range of proxies has been established based on studies of recent tsunami deposits. Microfossils (e.g. foraminifera, ostracods, diatoms) are often used to recognize tsunami deposits, and to differentiate them from those of other processes. In terms of foraminifera, tsunami deposits mostly contain allochthonous associations dominated by benthic intertidal to inner shelf taxa. Specimens may originate from outer shelf to bathyal depths; even planktonic forms may occur. Furthermore, changes in test numbers, taphonomy, size or adult/juvenile ratios compared to background sedimentation are common (Pilarczyk et al., 2014; Engel et al., 2016). However, dissolution of microfossils often prevent identification and diminish their value as a proxy (Yawsangratt et al., 2012). 2. Study goals and concept To address the problem of post-depositional alteration of microfossil associations in tsunami deposits, high-throughput metagenomic sequencing techniques are applied by the GEN-EX project to identify marine organisms in onshore sand layers based on their DNA remains. Metagenomics (or environmental genomics) is related to sequencing DNA directly from the environmental samples, where the genetic material may have been preserved in sedimentary records covering tens of thousands of years. Metagenomics is an emerging technique in environmental research and is used to characterize the diversity of bacterial communities but also higher organisms such as animals, plants and fungi of recent and ancient origin in a variety of settings, including ice, lake sediments, soils, cave deposits, and various types of surface waters. Metagenomics can also be used to detect cryptic diversity, ultimately providing more accurate estimates of biodiversity (Pedersen et al., 2015). Among the broad range of organisms, foraminifera (single-celled protists) show a water depth-related zonation in subtidal environments, and are the first to have been identified successfully in palaeo- tsunami deposits by their DNA (SzczuciĔski et al., 2016). The main objectives of GEN-EX include: quantifying the relationship between water depth and the distribution of different foraminiferal taxa where known tsunami deposits are present, using a comparative classic micropalaeontological and metagenomic approach; assessing the potential (based on both approaches) for identifying key indicator species in tsunami deposits in different coastal settings; and establishing how metagenomic approaches can contribute to the differentiation between storm and tsunami deposits. 3. DNA extraction DNA will be analysed in two types of material – modern extant foraminifera and sediments (tsunami deposits and adjacent layers). DNA extracted from single foraminiferal specimens will be followed by whole genome amplification to obtain sufficient DNA concentrations. Either part of the nuclear 18S rRNA region or the mitochondrial genome (mtDNA) will be amplified, before high-throughput sequencing of the amplicons. Sequences will be edited and aligned, and their identity verified by BLAST (Altschul et al., 1990) searches in Genbank and the Forambarcoding project (http://forambarcoding.unige.ch). A project-specific database of 18S and mtDNA data of the identified recent foraminifera will be constructed. Sampling of tsunami deposits and DNA extraction follows the protocol of SzczuciĔski et al. (2016). Suitable primers will be developed from our reference database of recent foraminifera to amplify overlapping short fragments of 18S or mtDNA of the target species. Amplicon concentration will be quantified and prepared for high-throughput sequencing. Sequence data will be analysed with different bioinformatics pipelines (e.g. QIIME), including quality control, removal of barcodes and adaptors, identification and removal of chimeric and redundant sequences, and comparisons with our own and open access databases of 18S data for defining Operational Taxonomic Units with 95% and 97% similarity cut-offs. 4. Study area One of the study areas, where the eDNA approach is applied, are the Shetland Islands, exposed to the mega-tsunami triggered by the early Holocene Storegga submarine slide off the coast of Norway. Sediment run-up of more than 25 m left a distinct landward-thinning sand layer with an erosive lower contact, large rip-up clasts, fining-upward sequences and marine diatoms in near-shore lakes and coastal peat lowlands. In addition to sediments associated with the Storegga tsunami, two younger tsunami deposits dated to c. 5 and 1.5 ka (Bondevik et al., 2005) are investigated. Sampling for the planned foraminiferal analyses and eDNA extraction of the deposits and their source area, comprising along the beach and subtidal area to the central shelf area is scheduled for the second half of March 2018. 5. Acknowledgements Funding is kindly provided by a BELSPO BRAIN-be pioneer grant (BR/175/PI/GEN-EX). 6. References Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J., 1990. Basic local alignment search tool. Journal of Molecular Biology, 215, 403–410. Bondevik, S., Mangerud, J., Dawson, S., Dawson, A. & Lohne, Ø., 2005. Evidence for three North Sea tsunamis at the Shetland Islands between 8000 and 1500 years ago. Quaternary Science Reviews, 24, 1757–1775. Engel, M., Oetjen, J., May, S.M. & Brückner, H., 2016. Tsunami deposits of the Caribbean – Towards an improved coastal hazard assessment. Earth-Science Reviews, 163, 260–296. Pedersen, M.W., Overballe-Petersen, S., Ermini, L., Sarkissian, C.D., Haile, J., Hellstrom, M., Spens, J., Thomsen, P.F., Bohmann, K., Cappellini, E., Bærholm Schnell, I., Wales, N.A., Carøe, C., Campos, P.F., Schmidt, A.M.Z., Gilbert, M.T.P., Hansen, A.J., Orlando, L. & Willerslev, E., 2015. Ancient and modern environmental DNA. Philosophical Transactions of the Royal Society B, 370, 20130383. Pilarczyk, J.E., Dura, T., Horton, B.P., Engelhart, S.E., Kemp, A.C. & Sawai, Y., 2014. Microfossils in coastal environments as indicators of paleo-earthquakes, tsunamis and storms. Palaeogeography, Palaeoclimatology, Palaeoecology, 413, 144–157. SzczuciĔski, W., Pawłowska, J., Lejzerowicz, F., Nishimura, Y., KokociĔski, M., Majewski, W., Nakamura, Y. & Pawlowski, J., 2016. Ancient sedimentary DNA reveals past tsunami deposits. Marine Geology, 381, 29–33. Yawsangratt, S., SzczuciĔski, W., Chaimanee, N., Chatprasert, S., Majewski, W. & Lorenc, S., 2012. Evidence of probable paleotsunami deposits on Kho Khao Island, Phang Nga Province, Thailand. Natural Hazards, 63, 151–163.
Located in Library / RBINS Staff Publications 2018
Conference Reference Abc Taxa: series of peer-reviewed manuals dedicated to capacity building in taxonomy & collection management
Today, the so-called taxonomic impediment, i.e., the lack of taxonomic (inclusive of genetic) information, taxonomic and curatorial expertise, and infrastructure in many parts of the world, means that accessing and generating taxonomic information remains extremely difficult. To alter this trend, the Convention on Biological Diversity installed the Global Taxonomy Initiative (GTI) and endorsed it with an operational program of work. Its objectives are to remedy the knowledge gaps in our taxonomic system, increase the number of well-trained taxonomists and curators, optimize the infrastructure needed to do sound taxonomic research, significantly improve access to taxonomic collections, data, and metadata, and, thereby, to improve decision- making in conservation of biodiversity. To speed up taxonomic capacity building the Belgian GTI Focal Point has established the series Abc Taxa (www.abctaxa.be), a toll-free information highway between experts and novices. It is believed that this artery will speed up the construction of taxonomic capacity, as it does not evoke the expensive, long-term teacher-apprentice relationships previously utilized to install operational, high-quality taxonomists and collection managers. Since 2005, 19 volumes have been released with subjects as diverse as taxonomy of sea cucumbers of the Comoros, good practices in collection management of mollusc collections, taxonomy of the amphibians of Cuba and of Guyana, taxonomy of algae of Sri Lanka, bee taxonomy in sub-Saharan Africa, mushroom taxonomy of Central Africa, introduction to the taxonomy of mites, taxonomy of invasive succulents of South Africa, taxonomy of the sawflies of southern Africa, taxonomy of the diatoms of the Congo, taxonomy of fish parasites of African Freshwater fishes and taxonomy of the brittle and basket stars of South Africa. This contribution briefly details the scope and aims of Abc Taxa, demonstrates the value of the series for development, and acts as a call for future manuscripts.
Located in Library / RBINS Staff Publications 2021
Article Reference Octet Stream Size-effect, asymmetry, and small-scale spatial variation in otolith shape of juvenile sole in the Southern North Sea
Located in Library / RBINS Staff Publications 2018
Article Reference Surface movement above old coal longwalls after mine closure
Although most subsidence occurs in the months and years after mining by the longwall method, surface movement is still occurring many decades after the mining. The aim of the study is to quantify the long term behavior. Satellite data (radar-interferometry) were analyzed to study an area of about 2km2 during the 18years following the closure of the underground infrastructure and the flooding of the underground workings and rock mass. It was observed that, on average, a residual downward movement took place till 7–12years after the closure, followed by a clear uplift. However, the first signs of an uplift occurred in certain sub-areas 3–4years after the closure. Zones within the area studied were identified with either larger or smaller movements. However, the spatial variation of the surface subsidence or uplift could not be directly explained by the characteristics of mining.
Located in Library / RBINS Staff Publications 2017
Article Reference Subsidence related to groundwater pumping for breweries in Merchtem area (Belgium), highlighted by Persistent Scaterrer Interferometry
ERS, ENVISAT and TerraSAR-X Synthetic Aperture Radar scenes covering the time span 1992–2014 were processed using a Persistent Scatterer technique to study the ground movements in Merchtem (25km NW of Brussels, Belgium). The processed datasets, covering three consecutive time intervals, reveal that the investigated area is affected by a global subsidence trend related to the extraction of groundwater in the deeper Cambro-Silurian aquifer. Through time the subsidence pattern is reduced and replaced by an uplift related to the rising water table attested by piezometers located in this aquifer. The subsidence is finally reduced to a zone where currently three breweries are very active and pump groundwater in the Ledo-Paniselian aquifer and in the Cambro-Silurian for process water for the production.
Located in Library / RBINS Staff Publications 2017
Article Reference Additional data on eastern Pantepui Orthalicoidea land snails (Mollusca, Gastropoda)
Located in Library / RBINS Staff Publications 2020
Article Reference Givetian rugose corals from the Zemmour in Mauritania
Located in Library / RBINS Staff Publications 2017
Article Reference Ecology of Devonian ostracods: application to the Frasnian/Famennian boundary bioevent in the type region (Dinant Synclinorium, Belgium)
Located in Library / RBINS Staff Publications 2017