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Inproceedings Reference Phylogenetic investigation of the Baikalodrilus species flock (Clitellata, Naididae) endemic to Lake Baikal, Siberia
Located in Library / RBINS Staff Publications 2017
Inproceedings Reference Phylogenetic position of Olbitherium (Mammalia, Perissodactyla) based on new material from the early Eocene Wutu Formation
The genus Olbitherium was originally described in 2004 from the early Eocene of the Wutu Formation in China as a ‘perissodactyl-like’ archaic ungulate. Described material of Olbitherium consists of partial dentaries with lower cheek teeth, isolated upper molars, and an isolated upper premolar. Subsequent collaborative fieldwork by Belgian and Chinese researchers discovered new material including a partial skull, the anterior portion of the dentary, and associated postcrania. In their general form, the skull and postcrania are similar to those of early perissodactyls. The new material provides a more complete picture of the upper dentition, and the anterior dentary demonstrates the presence of three lower incisors and a large canine, both ancestral features for perissodactyls. A phylogenetic analysis was conducted to test the affinities of Olbitherium, using a matrix of 321 characters and 72 taxa of placental mammals emphasizing perissodactyls and other ungulates. The results produced four shortest trees of 1981 steps. In all four trees, Olbitherium is the sister-taxon to all perissodactyls except Ghazijhippus. In contrast, when scoring was restricted to the originally described material, the results produced 16 shortest trees of 1970 steps, and Olbitherium nests well within Perissodactyla as sister-taxon to a clade including Lambdotherium and the brontotheriids Eotitanops and Palaeosyops. The new material not only supports the identification of Olbitherium as a perissodactyl, but it also suggests that it is significant for understanding the ancestral perissodactyl morphotype. Funding Sources U.S. National Science Foundation (DEB1456826), Chinese Ministry of Science and Technology (2009DFA32210), and Belgian Science Policy Office (BL/36/C54).
Located in Library / RBINS Staff Publications 2020
Article Reference Phylogenetic reconstructions of ostracodes - a molecular approach. In: Park L.E. & Smith A.J. (Eds.) Bridging the gap: trends in the ostracode biological and geological sciences
Located in Library / RBINS Staff Publications
Article Reference Phylogenetic reconstructions of ostracods – a molecular approach. In: PARK, L.E. & A.J. SMITH (Eds.), Bridging the gap: trends in the ostracode biological and geological sciences
Located in Library / RBINS Staff Publications
Article Reference Phylogenetic relationships of Gomphocythere (Crustacea, Ostracoda) in Lake Tanganyika, East Africa
Located in Library / RBINS Staff Publications
Unpublished Reference Phylogenetics and Integrative Taxonomy of African Water Snakes (Squamata: Colubridae: Grayia)
Grayia is a genus of relatively large (1.5 – 2.5 m) aquatic Afrotropical snakes that is currently comprised of four species. Recent molecular phylogenies recovered Grayia in its own distinct subfamily (Grayiinae), which was strongly supported as the sister group to Colubrinae. Because tropical African snakes are generally understudied, the relationships within Grayia are poorly known. Due to morphological conservatism, identification is often difficult and previous studies involving Grayia included misidentified specimens in other genera. The goal of this study is to build a phylogenetic tree that can be used to understand the relationships and taxonomy of Grayia via an integrative taxonomic approach that combines molecular and morphological data. One nuclear (BDNF) and four mitochondrial genes (COI, cyt b, 16S and ND4) were used to construct a phylogenetic tree with Maximum likelihood methods; outgroups included the genera Calamaria, Sibynophis and Masticophis. Preliminary trees suggest G. ornata and G. smithii are sister taxa, whereas G. caesar (originally described as the sole member of the genus Xenurophis) is sister to G. tholloni. At least two divergent lineages of G. ornata suggest cryptic species are likely present in Democratic Republic of the Congo (DRC) and Republic of Congo.
Located in Library / RBINS Staff Publications 2021
Article Reference Phylogenomic Characterization of Lopma Virus and Praja Virus, Two Novel Rodent-Borne Arteriviruses
Located in Library / RBINS Staff Publications 2021 OA
Article Reference Phylogenomics of African radiation of Praomyini (Muridae: Murinae) rodents: first fully resolved phylogeny, evolutionary history and delimitation of extant genera
Located in Library / RBINS Staff Publications 2021
Article Reference Phylogenomics of Psammodynastes and Buhoma (Elapoidea: Serpentes), with the description of a new Asian snake family
Asian mock vipers of the genus Psammodynastes and African forest snakes of the genus Buhoma are two genera belonging to the snake superfamily Elapoidea. The phylogenetic placements of Psammodynastes and Buhoma within Elapoidea has been extremely unstable which has resulted in their uncertain and debated taxonomy. We used ultraconserved elements and traditional nuclear and mitochondrial markers to infer the phylogenetic relationships of these two genera with other elapoids. Psammodynastes, for which a reference genome has been sequenced, were found, with strong branch support, to be a relatively early diverging split within Elapoidea that is sister to a clade consisting of Elapidae, Micrelapidae and Lamprophiidae. Hence, we allocate Psammodynastes to its own family, Psammodynastidae new family. However, the phylogenetic position of Buhoma could not be resolved with a high degree of confidence. Attempts to identify the possible sources of conflict in the rapid radiation of elapoid snakes suggest that both hybridisation/introgression during the rapid diversification, including possible ghost introgression, as well as incomplete lineage sorting likely have had a confounding role. The usual practice of combining mitochondrial loci with nuclear genomic data appears to mislead phylogeny reconstructions in rapid radiation scenarios, especially in the absence of genome scale data.
Located in Library / RBINS Staff Publications 2024
Article Reference Phylogeny and historical biogeography of the Megalocypridinae ROME, 1965 with an updated checklist of this subfamily. In: R. C. WHATLEY & C. MAYBURY (eds.), Ostracoda and Global events, Proceedings of the 10th international symposium on Ostracoda
Located in Library / RBINS Staff Publications