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Article Reference Reduced host-specificity in a parasite infecting non-littoral Lake Tanganyika cichlids evidenced by intraspecific morphological and genetic diversity
Lake Tanganyika is well-known for its high species-richness and rapid radiation processes. Its assemblage of cichlid fishes recently gained momentum as a framework to study parasite ecology and evolution. It offers a rare chance to investigate the influence of a deepwater lifestyle in a freshwater fish-parasite system. Our study represents the first investigation of parasite intraspecific genetic structure related to host specificity in the lake. It focused on the monogenean flatworm Cichlidogyrus casuarinus infecting deepwater cichlids belonging to Bathybates and Hemibates. Morphological examination of C. casuarinus had previously suggested a broad host range, while the lake’s other Cichlidogyrus species are usually host specific. However, ongoing speciation or cryptic diversity could not be excluded. To distinguish between these hypotheses, we analysed intraspecific diversity of C. casuarinus. Monogeneans from nearly all representatives of the host genera were examined using morphometrics, geomorphometrics and genetics. We confirmed the low host-specificity of C. casuarinus based on morphology and nuclear DNA. Yet, intraspecific variation of sclerotized structures was observed. Nevertheless, the highly variable mitochondrial DNA indicated recent population expansion, but no ongoing parasite speciation, confirming, for the first time in freshwater, reduced parasite host specificity in the deepwater realm, probably an adaptation to low host availability.
Located in Library / RBINS Staff Publications 2016
Article Reference Redundancy and ecosystem stability in the fluctuating environments of long-lived lakes. In: ODADA, E. & D. OLAGO (eds.), The East African Great Lakes: Limnology, Palaeolimnology and Biodiversity. Advances in Global Research Series
Located in Library / RBINS Staff Publications
Article Reference Reevaluating the timing of Neanderthal disappearance in Northwest Europe
Understanding when Neanderthals disappeared is a hotly debated topic. When radiocarbon dating placed the Spy Neanderthals amongst the latest surviving in Northwest Europe, questions were raised regarding the reliability of the dates. Using a procedure more efficient in removing contamination and ancient genomic analysis, we show that previous dates produced on Neanderthal specimens from Spy are too young by up to 10,000 y. Our direct radiocarbon dates on the Neanderthals from Spy and those from Engis and Fonds-de-Forêt show a reduction of the uncertainty for the time window corresponding to Neanderthal disappearance in Northwest Europe. This population disappeared at 44,200 to 40,600 cal B.P. (at 95.4% probability). This is also earlier than previous suggestions based on dates on bulk collagen.Elucidating when Neanderthal populations disappeared from Eurasia is a key question in paleoanthropology, and Belgium is one of the key regions for studying the Middle to Upper Paleolithic transition. Previous radiocarbon dating placed the Spy Neanderthals among the latest surviving Neanderthals in Northwest Europe with reported dates as young as 23,880 ± 240 B.P. (OxA-8912). Questions were raised, however, regarding the reliability of these dates. Soil contamination and carbon-based conservation products are known to cause problems during the radiocarbon dating of bulk collagen samples. Employing a compound-specific approach that is today the most efficient in removing contamination and ancient genomic analysis, we demonstrate here that previous dates produced on Neanderthal specimens from Spy were inaccurately young by up to 10,000 y due to the presence of unremoved contamination. Our compound-specific radiocarbon dates on the Neanderthals from Spy and those from Engis and Fonds-de-Forêt demonstrate that they disappeared from Northwest Europe at 44,200 to 40,600 cal B.P. (at 95.4% probability), much earlier than previously suggested. Our data contribute significantly to refining models for Neanderthal disappearance in Europe and, more broadly, show that chronometric models regarding the appearance or disappearance of animal or hominin groups should be based only on radiocarbon dates obtained using robust pretreatment methods.All the radiocarbon data generated at the ORAU are archived internally and are also available on the laboratory’s website, along with a link to the paper. The mitochondrial genome from Fonds-de-Forêt is deposited in GenBank with the accession number PRJEB39136. All other study data are included in the article and/or SI Appendix.
Located in Library / RBINS Staff Publications 2021
Article Reference Référencement géologique des ressources en matières colorantes entre l’Ardèche et le Gardon : un outil pour appréhender les paysages vécus au cours de la Préhistoire.
Located in Library / RBINS Staff Publications 2019
Article Reference Référencement géologique des ressources en matières colorantes entre l’Ardèche et le Gardon : un outil pour appréhender les paysages vécus au cours de la Préhistoire.
Located in Library / RBINS Staff Publications 2021
Article Reference Relation between mitochondrial DNA hyperdiversity, mutation rate and mitochondrial genome evolution in Melarhaphe neritoides (Gastropoda: Littorinidae) and other Caenogastropoda
Mitochondrial DNA hyperdiversity is primarily caused by high mutation rates (µ) and has potential implications for mitogenome architecture and evolution. In the hyperdiverse mtDNA of Melarhaphe neritoides (Gastropoda: Littorinidae), high mutational pressure generates unusually large amounts of synonymous variation, which is expected to (1) promote changes in synonymous codon usage, (2) reflect selection at synonymous sites, (3) increase mtDNA recombination and gene rearrangement, and (4) be correlated with high mtDNA substitution rates. The mitogenome of M. neritoides was sequenced, compared to closely related littorinids and put in the phylogenetic context of Caenogastropoda, to assess the influence of mtDNA hyperdiversity and high µ on gene content and gene order. Most mitogenome features are in line with the trend in Mollusca, except for the atypical secondary structure of the methionine transfer RNA lacking the TΨC-loop. Therefore, mtDNA hyperdiversity and high µ in M. neritoides do not seem to affect its mitogenome architecture. Synonymous sites are under positive selection, which adds to the growing evidence of non-neutral evolution at synonymous sites. Under such non-neutrality, substitution rate involves neutral and non-neutral substitutions, and high µ is not necessarily associated with high substitution rate, thus explaining that, unlike high µ, a high substitution rate is associated with gene order rearrangement.
Located in Library / RBINS Staff Publications 2018
Article Reference Reliability of AMS 14C dates of moss temper preserved in Neolithic pottery from the Scheldt river valley (Belgium).
Located in Library / RBINS Staff Publications 2019
Article Reference Reliable DNA barcoding performance proved for species and island populations of Comoran squamate reptiles
Located in Library / RBINS Staff Publications
Inbook Reference Remains of traded fish in archaeological sites : indicators of status or bulk food ?
The presence on archaeological sites of fish species that have been imported from distant areas has often been regarded as an indicator of high status. Typical examples include the Spanish mackerel (Scomber japonicus) and the fish sauces found at Roman sites from Middle and Western Europe, or the Nilotic fish found at Chalcolithic to Crusader period sites in the Eastern Mediterranean area. The available evidence in the literature for trade in those species is reviewed and also the herring trade in medieval Europe is discussed. The factors that have an influence on the price of those traded food items include the quality of the fish products, production costs and transport, but are difficult to evaluate. It appears moreover that the number of sites with exotic fish is growing rapidly now that better recovery techniques are used and the quality of the reference collections used during study is improving. Traded fish seem to turn up in numerous settlement types of varying status, thus showing that caution is needed when using these remains as indicators of high purchasing power.
Located in Library / RBINS Staff Publications
Article Reference Repeated unidirectional introgression of nuclear and mitochondrial DNA between four congeneric Tanganyikan cichlids.
With an increasing number of reported cases of hybridization and introgression, interspecific gene flow between animals has recently become a widely accepted and broadly studied phenomenon. In this study, we examine patterns of hybridization and introgression in Ophthalmotilapia spp., a genus of cichlid fish from Lake Tanganyika, using mitochondrial and nuclear DNA from all four species in the genus and including specimens from over 800 km of shoreline. These four species have very different, partially overlapping distribution ranges, thus allowing us to study in detail patterns of gene flow between sympatric and allopatric populations of the different species. We show that a significant proportion of individuals of the lake-wide distributed O. nasuta carry mitochondrial and/or nuclear DNA typical of other Ophthalmotilapia species. Strikingly, all such individuals were found in populations living in sympatry with each of the other Ophthalmotilapia species, strongly suggesting that this pattern originated by repeated and independent episodes of genetic exchange in different parts of the lake, with unidirectional introgression occurring into O. nasuta. Our analysis rejects the hypotheses that unidirectional introgression is caused by natural selection favoring heterospecific DNA, by skewed abundances of Ophthalmotilapia species or by hybridization events occurring during a putative spatial expansion in O. nasuta. Instead, cytonuclear incompatibilities or asymmetric behavioral reproductive isolation seem to have driven repeated, unidirectional introgression of nuclear and mitochondrial DNA into O. nasuta in different parts of the lake.
Located in Library / RBINS Staff Publications