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Article Reference Evolutionary history of the thicket rats (genus Grammomys) mirrors the evolution of African forests since late Miocene
Aim Grammomys are mostly arboreal rodents occurring in forests, woodlands and thickets throughout sub-Saharan Africa. We investigated whether the divergence events within the genus follow the existing evolutionary scenario for the development of African forests since the late Miocene. Location Sub-Saharan African forests and woodlands. Methods We inferred the molecular phylogeny of Grammomys using Bayesian and maximum likelihood methods and DNA sequences of 351 specimens collected from across the distribution of the genus. We mapped the genetic diversity, estimated the divergence times by a relaxed clock model and compared evolution of the genus with forest history. Results Phylogenetic analysis confirms the monophyly of Grammomys and reveals five main Grammomys lineages with mainly parapatric distributions: (1) the poensis group in Guineo-Congolese forests; (2) the selousi group with a distribution mainly in coastal forests of southern and eastern Africa; (3) the dolichurus group restricted to the easternmost part of South Africa; (4) the macmillani group in the northern part of eastern and Central Africa with one isolated species in Guinean forests; and (5) the surdaster group, widely distributed in eastern Africa south of the equator. Every group contains well supported sublineages suggesting the existence of undescribed species. The earliest split within the genus (groups 1 vs. 2–5) occurred in the late Miocene and coincides with the formation of the Rift Valley which resulted in the east–west division of the initially pan-African forest. The subsequent separation between groups (2 vs. 3–5) also dates to the end of the Miocene and suggests the split between Grammomys from coastal to upland forests in eastern Africa followed by a single dispersal event into western Africa during the Pleistocene. Conclusions The evolutionary history of the genus Grammomys closely reflects the accepted scenario of major historical changes in the distribution of tropical African forests since the late Miocene.
Located in Library / RBINS Staff Publications 2016
Article Reference Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus
Recent genomic data have revealed multiple interactions between Neanderthals and modern humans, but there is currently little genetic evidence regarding Neanderthal behaviour, diet, or disease. Here we describe the shotgun-sequencing of ancient DNA from five specimens of Neanderthal calcified dental plaque (calculus) and the characterization of regional differences in Neanderthal ecology. At Spy cave, Belgium, Neanderthal diet was heavily meat based and included woolly rhinoceros and wild sheep (mouflon), characteristic of a steppe environment. In contrast, no meat was detected in the diet of Neanderthals from El Sidrón cave, Spain, and dietary components of mushrooms, pine nuts, and moss reflected forest gathering. Differences in diet were also linked to an overall shift in the oral bacterial community (microbiota) and suggested that meat consumption contributed to substantial variation within Neanderthal microbiota. Evidence for self-medication was detected in an El Sidrón Neanderthal with a dental abscess and a chronic gastrointestinal pathogen (Enterocytozoon bieneusi). Metagenomic data from this individual also contained a nearly complete genome of the archaeal commensal Methanobrevibacter oralis (10.2× depth of coverage)-the oldest draft microbial genome generated to date, at around 48,000 years old. DNA preserved within dental calculus represents a notable source of information about the behaviour and health of ancient hominin specimens, as well as a unique system that is useful for the study of long-term microbial evolution.
Located in Library / RBINS Staff Publications 2017
Article Reference Geochemical and mineralogical characterisation of vitrified waste material discovered in large quantities on Roman salt production sites along the southern North Sea coast.
Located in Library / RBINS Staff Publications 2022
Article Reference Toxic Peptides in Populations of Two Pergid Sawflies, Potential Biocontrol Agents of Brazilian Peppertree
Located in Library / RBINS Staff Publications 2018
Article Reference Fossil bog soils (`dwog horizons') and their relation to Holocene coastal changes in the Jade Weser region, southern North Sea, Germany
After the deceleration of the postglacial marine transgression, the German North Sea coast was subject to deposition of a complex pattern of subtidal to terrestrial facies. This study aims at reconstructing these facies changes in the `Land Wursten' region (Lower Saxony) by focussing on so-called dwog horizons (incipient soil horizons of the pre-engineered salt marshes). We explore their implications for relative sea-level reconstructions and their indication for early settlement activities. Archive drilling data (1960, provided by the `Landesamt für Bergbau, Energie und Geologie') were analysed to create five high-resolution stratigraphic cross sections. Three new drilling records were subjected to sedimentological and microfaunal investigations and interpreted to verify and calibrate the archive data. Two dwog horizons were found and 14C-AMS dated. We found basal salt marsh deposits inundated by a high-energy event and covered by tidal flat sediments. The thick tidal flat unit is again overlain by salt marsh deposits indicating the transition from a shallow marine to a terrestrial environment where dwogs were developed and covered by episodic marine incursions. The ages of the dwogs (1128–969 cal BC; cal AD 1426–1467) do not correlate with known layers of adjacent settlement sites and are critically discussed. However, we show that they correlate with phases of stagnant regional relative sea level (RSL) and can be used as RSL indicators. The combined archive and modern data provide valuable information for the RSL reconstruction and palaeoenvironmental changes. However, further research is recommended to accomplish more detailed information about coastal response during the Holocene sea-level changes and implications for settlement dynamics.
Located in Library / RBINS Staff Publications 2018
Article Reference Multiple dating approach (14C, 230Th/U and 36Cl) of tsunami-transported reef-top boulders on Bonaire (Leeward Antilles) – Current achievements and challenges
Located in Library / RBINS Staff Publications 2018
Article Reference Mega-tsunami conglomerates and flank collapses of ocean island volcanoes
Located in Library / RBINS Staff Publications 2018
Article Reference Chenier-type ridges in Giralia Bay (Exmouth Gulf, Western Australia) - Processes, chronostratigraphy, and significance for recording past tropical cyclones
Located in Library / RBINS Staff Publications 2018
Article Reference Comparative Anatomy of Mandibular Neurovascular Canals in Modern Human and Great Apes: A Pilot Study With Cone Beam Computed Tomography
The aim of the present study was to compare mandibular neurovascular canal anatomy in human and great apes by using cone beam computed tomography (CBCT). The anatomical variability of mandibular neurovascular canals (mandibular, incisive and lingual canals) of 129 modern humans and great apes (Homo, Pan and Gorilla) were analyzed by linear measurements on CBCT images. The Kruskal-Wallis non-parametric test and Dunn’s all pairs for joint ranks were applied to compare the variability of mandibular canals among these groups. Human, Chimpanzee and Gorilla groups showed significant differences in the dimensions of the mandibular canal, mental foramen, incisive canal, lingual canal and anterior mandibular bone width. Bifid mandibular canals and anterior loops were the anatomical variations most frequently observed in the Gorilla. Humans had a larger mental foramen and a distinctive incisive canal. The latter could not be identified in the Gorilla group. The variability in the anatomy within mandibles of human and non-human primates, shows different forms in the neurovascular structures. In comparison to the mandible of great apes, the incisive canal is suggested to be a feature unique to the human mandible.
Located in Library / RBINS Staff Publications 2018
Article Reference Reconstructing the genetic history of late Neanderthals
Although it has previously been shown that Neanderthals contributed DNA to modern humans1,2, not much is known about the genetic diversity of Neanderthals or the relationship between late Neanderthal populations at the time at which their last interactions with early modern humans occurred and before they eventually disappeared. Our ability to retrieve DNA from a larger number of Neanderthal individuals has been limited by poor preservation of endogenous DNA3 and contamination of Neanderthal skeletal remains by large amounts of microbial and present-day human DNA3,4,5. Here we use hypochlorite treatment6 of as little as 9 mg of bone or tooth powder to generate between 1- and 2.7-fold genomic coverage of five Neanderthals who lived around 39,000 to 47,000 years ago (that is, late Neanderthals), thereby doubling the number of Neanderthals for which genome sequences are available. Genetic similarity among late Neanderthals is well predicted by their geographical location, and comparison to the genome of an older Neanderthal from the Caucasus2,7 indicates that a population turnover is likely to have occurred, either in the Caucasus or throughout Europe, towards the end of Neanderthal history. We find that the bulk of Neanderthal gene flow into early modern humans originated from one or more source populations that diverged from the Neanderthals that were studied here at least 70,000 years ago, but after they split from a previously sequenced Neanderthal from Siberia2 around 150,000 years ago. Although four of the Neanderthals studied here post-date the putative arrival of early modern humans into Europe, we do not detect any recent gene flow from early modern humans in their ancestry.
Located in Library / RBINS Staff Publications 2018