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Integration of genetic connectivity and local adaptation in the design of marine protected area in the Southern Ocean: a case study opf Trematomus fishes
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Polar ecosystems harbour a unique cold-adapted biodiversity that is threatened by rapid environmental change and increasing anthropogenic impact. In this context, multi-scale data on connectivity and adaptation are essential for supporting exploitation and conservation management of living resources and ecosystems. Notably, marine protected areas are most effective if implemented as a network that considers functional diversity and connectivity within and between species. In the present study, 607 individuals of ten Trematomus species were sequenced using ddRAD sequencing techniques. Thousands of genomic variants were used to investigate inter- and intraspecific patterns of divergence and connectivity across the Southern Ocean shelf. Moreover, genomic SNPs that showed evidence of selection (“outlier loci”) were used to explore potential local adaptation of the populations to different environmental conditions. Population structure analyses of four different species (T. loennbergii, T. eulepidotus, T. scotti and T. newnesi) suggest long- range dispersal across the Weddell Sea and even along the entire West Antarctic coast that might be facilitated by the Weddell Sea Gyre and Antarctic Coastal current. A genetic break at the level of the Filchner Trough was observed in several species. The strong outflow from the Filchner-Ronne ice shelf may separate the trough area from the remaining Weddell Sea habitat. Finally, results suggest that previously undetected cryptic diversity may be present within T. eulepidotus and T. loennbergii. Altogether, the present results contribute to the assessment of diversity, connectivity and adaptation on the Southern Ocean shelf, which is imperative in view of unprecedented global change.
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COnservation management of POlar ecosystems (COPE project): using genomic approaches to study connectivity in Antarctic fishes and amphipods, across spatial and functional scales
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The unique cold-adapted ecosystems of the Southern Ocean are threatened by rapid environmental change and increasing anthropogenic impact. Marine protected areas (MPAs), areas of ocean where human activities are limited or prohibited, have been increasingly promoted as a tool for mitigating ocean threats and conserving biodiversity. National governments and the Commission for the Conservation of Antarctic Marine Living Resources (CCAMLR) is progressing towards establishing a representative network of MPAs in the Southern Ocean. Connectivity is now widely recognized to be a crucial variable for the design and management of MPA networks through the effects that movements of individuals and genes have on population viability, metapopulation persistence, and resilience to disturbance. The understanding of connectivity patterns is required to prioritize the allocation of conservation effort towards, for instance, areas acting as central connection nodes in a network of MPAs. The COPE project aims to advance the understanding of genetic connectivity and adaptation in key benthic and pelagic Antarctic organisms (crustaceans and actinopterygian fishes) using population genomic approaches (ddRAD sequencing). Thousands of genomic variants were used in two model genera, the Charcotia amphipod and the Trematomus fishes, to provide estimates of neutral and adaptive genetic variation and structure at different trophic levels and at a circumpolar scale. The results of the COPE project will contribute to our understanding of the spatial and functional distribution of biological variation in the Southern Ocean, required to develop suitable management and conservation strategies through CCAMLR.
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Genetic connectivity of Trematomus fishes in the Southern Ocean
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Polar ecosystems harbour a unique cold-adapted biodiversity that is threatened by rapid environmental change and increasing anthropogenic impact. In this context, collecting data on connectivity between populations is essential for supporting conservation management of living resources and ecosystems. Genetic connectivity is the extent to which populations in different parts of a species' geographical range are linked by the exchange of larvae, juveniles or adults (which are the vectors of genetic material). In the Southern Ocean, several Marine Protected Areas (MPAs) – large areas where human activities are restricted or prohibited to promote conservation – are established or under negotiations. Such MPAs are most effective if implemented as a network that considers genetic diversity and connectivity within and between species. In the present study, 607 individuals of ten Trematomus species were sequenced using reduced representation sequencing techniques. Thousands of genomic variants were used to investigate inter- and intraspecific patterns of divergence and connectivity across the Southern Ocean shelf. Population structure analyses of four different species (T. loennbergii, T. eulepidotus, T. scotti and T. newnesi) suggest long- range dispersal across the Weddell Sea and even along the entire West Antarctic coast that might be facilitated by the Weddell Sea Gyre and Antarctic Coastal current. A genetic break at the level of the Filchner Trough was observed in several species. The strong outflow from the Filchner-Ronne ice shelf may separate the trough area from the remaining Weddell Sea habitat. Finally, results suggest that previously undetected cryptic species may be present within both T. eulepidotus and T. loennbergii. Altogether, the present results contribute to the assessment of diversity and connectivity on the Southern Ocean shelf, which is imperative in view of unprecedented global change.
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Is Antarctica an evolutionary incubator? Phylogenetic comparative study of the amphipod family Iphimediidae on the Antarctic shelf
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Around 40 million years ago, Antarctica’s geographic isolation led to a dramatic cooling of its marine shelf, causing many lineages to go extinct whilst others adapted and flourished. Among the successful ones is the amphipod family Iphimediidae. Here, we apply advanced phylogenetic, comparative, and morphometric methods to explore the evolutionary processes which generated the exceptional diversity of this clade. To this purpose, three types of data were collected: (1) a novel phylogeny of the family was reconstructed from a multigene molecular dataset, (2) 3D shape data were obtained by applying geometric morphometric methods on micro-CT scans, and (3) stable isotope ratios (δ13C and δ15N) were measured and used as proxy for trophic ecology. First, possible evolutionary correlations between mouthpart shapes and stable isotope ratios were examined. Significant correlations suggest that mouthpart shapes are adapted to the food source. Second, species boundaries were investigated using a combination of DNA-based delimitation methods and detailed morphological/morphometric analyses, revealing that Iphimediidae species diversity is greatly underestimated. Most described species were found to be complexes of multiple, morphologically similar species. Finally, changes in lineage diversification rates were explored alongside the evolution of morphological traits. Late bursts of lineage diversification (appr. 7-3 Mya) combined with a late partitioning of mouthparts’ shape diversity might result from the invasion of novel ecological niches. Plio-Pleistocene glacial cycles, which have been hypothesized to act as a diversity pump, might also have promoted such late diversification events in Antarctic iphimediids. This integrative approach, applied here for the first time in Antarctic invertebrates, enhances our understanding of the evolutionary dynamics shaping Antarctic shelf biodiversity.
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RBINS Staff Publications 2024
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Is Antarctica an evolutionary incubator? Phylogenetic comparative study of the amphipod family Iphimediidae on the Antarctic shelf
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Around 40 million years ago, Antarctica’s geographic isolation led to a dramatic cooling of its marine shelf, causing many lineages to go extinct whilst others adapted and flourished. Among the successful ones is the amphipod family Iphimediidae. Here, we apply advanced phylogenetic, comparative, and morphometric methods to explore the evolutionary processes which generated the exceptional diversity of this clade. To this purpose, three types of data were collected: (1) a novel phylogeny of the family was reconstructed from a multigene molecular dataset, (2) 3D shape data were obtained by applying geometric morphometric methods on micro-CT scans, and (3) stable isotope ratios (δ13C and δ15N) were measured and used as proxy for trophic ecology. First, possible evolutionary correlations between mouthpart shapes and stable isotope ratios were examined. Significant correlations suggest that mouthpart shapes are adapted to the food source. Second, species boundaries were investigated using a combination of DNA-based delimitation methods and detailed morphological/morphometric analyses, revealing that Iphimediidae species diversity is greatly underestimated. Most described species were found to be complexes of multiple, morphologically similar species. Finally, changes in lineage diversification rates were explored alongside the evolution of morphological traits. Late bursts of lineage diversification (appr. 7-3 Mya) combined with a late partitioning of mouthparts’ shape diversity might result from the invasion of novel ecological niches. Plio-Pleistocene glacial cycles, which have been hypothesized to act as a diversity pump, might also have promoted such late diversification events in Antarctic iphimediids. This integrative approach, applied here for the first time in Antarctic invertebrates, enhances our understanding of the evolutionary dynamics shaping Antarctic shelf biodiversity.
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RBINS Staff Publications 2024
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Integrating genetic connectivity and local adaptation in effective Marine Protected Area design: a case study on Southern Ocean Trematomus fishes.
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Polar ecosystems support a distinctive, cold-adapted biodiversity that faces significant threats from rapid environmental changes and escalating human impacts. To effectively manage and conserve these living resources, multi-scale data on connectivity and adaptation are essential. Marine protected areas (MPAs) are most effective when designed as interconnected networks that account for both functional diversity and connectivity within and among species. In this study, 607 individuals from ten Trematomus species were analyzed through ddRAD sequencing, yielding thousands of genomic markers to examine patterns of divergence and connectivity on the Southern Ocean shelf, both within and between species. Genomic SNPs showing evidence of selection, identified as "outlier loci," were further analyzed to explore potential local adaptations to varying environmental conditions. Population structure analyses of four species — T. loennbergii, T. eulepidotus, T. scotti, and T. newnesi — indicate extensive dispersal across the Weddell Sea and along the West Antarctic coast, likely facilitated by the Weddell Sea Gyre and the Antarctic Coastal Current. A genetic discontinuity was detected near the Filchner Trough in several species, likely due to the strong outflow from the Filchner-Ronne ice shelf, which may isolate the trough region from the broader Weddell Sea habitat. Additionally, evidence of previously unrecognized cryptic diversity was observed in T. eulepidotus and T. loennbergii. These findings contribute to our understanding of diversity, connectivity, and adaptation on the Southern Ocean shelf, a critical foundation for conservation amid unprecedented global change.
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Les sinusites maxillaires à l’époque mérovingienne. Étude des nécropoles de Ciply, Braives et Torgny (Belgique, VIe-VIIe siècles ap. J.-C.)
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Les sinusites maxillaires chroniques font actuellement partie des pathologies respiratoires les plus communes. Les modifications des parois osseuses qu’elles entrainent peuvent être observées dans les populations du passé permettant ainsi d’apporter de précieux éléments sur leur santé respiratoire. Ces dernières années, plusieurs auteurs ont étudié les sinusites dans des populations médiévales européennes mais aucune recherche n’avait encore porté sur la période mérovingienne. Notre étude comble cette lacune en analysant trois populations de Belgique datées des VIe-VIIe siècles : Ciply, Braives et Torgny. L’échantillon total s’élève à 145 individus pour lesquels au moins une paroi sinusienne complète était visible à l’œil nu. Les sinus maxillaires ont été analysés selon la méthode développée par Boocock et collaborateurs en 1995. Quatre critères de changement osseux ont ainsi été enregistrés : le type, le degré de développement, l’étendue et la sévérité des lésions. Au total, 143 individus présentaient des modifications osseuses, soit un taux de prévalence de 98,6 %. Celui-ci est très élevé par rapport aux fréquences observées dans des populations actuelles (de 7,5 à 66 %). Il est également supérieur à ce qui a été relevé dans les populations anciennes même si deux échantillons du Bas Moyen Âge (suédois et belge) ont livré des prévalences qui dépassent les 90 %. La rudesse du climat, le mode de vie et l’état sanitaire en Belgique au Haut Moyen Âge pourraient expliquer ce résultat extrême. Au sein de notre échantillon, aucune différence de sévérité n’a été observée en fonction de l’origine géographique ou du sexe. En revanche, le groupe plus âgé présente des atteintes significativement plus sévères. Ceci pourrait résulter d’un effet cumulatif de la maladie ou d’une plus grande fragilité des aînés. Notre étude apporte sa contribution à la connaissance de l’état sanitaire des populations mérovingiennes dont le mode de vie est principalement documenté via l’étude de leurs nécropoles
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Base du crâne, labyrinthe osseux et dimorphisme sexuel : investigation morphométrique au sein d’un échantillon d’Europe de l’Ouest
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L’estimation du sexe biologique d’un individu constitue une étape primordiale de l’analyse anthropologique, que ce soit en contexte archéologique ou forensique. Elle doit se fonder sur des méthodes de diagnose sexuelle reproductibles, fiables et validées. Néanmoins, cette tâche peut s’apparenter à un véritable défi lorsque la préservation des éléments diagnostiques osseux n’est pas optimale, et ce d’autant plus s’il s’agit de restes immatures ou brûlés. Face à de tels restes fragmentés, une voie prometteuse consisterait à mettre en place une méthode de diagnose sexuelle s’appuyant sur un élément osseux à la fois fortement dimorphique et à la survie taphonomique avérée. Alliant ostéométrie et outils digitaux au travers d’une approche strictement morphométrique, cette recherche propose d’évaluer le dimorphisme de la base du crâne (i.e., os occipital et temporaux) et celui du labyrinthe osseux de l’oreille interne sur un assemblage osseux comprenant 611 crânes et 121 labyrinthes appartenant à des sujets européens – immatures et adultes – d’âge et de sexe connus. Les résultats obtenus dans cette étude démontrent d’une part que le dimorphisme sexuel de l’os temporal est plus marqué que celui de l’os occipital, et ce dès la phase pubertaire, et d’autre part qu’il n’est pas possible d’établir une méthode de diagnose sexuelle indépendante de l’âge sur le labyrinthe osseux du fait des différences d’expression de son dimorphisme sexuel observées entre les immatures et les adultes. En outre, ce travail a permis d’établir plusieurs modèles prédictifs de diagnose sexuelle à partir de la base du crâne adulte (avec de 77 à 87 % de classification correcte), du labyrinthe osseux adulte (de 76 à 83 %) et du labyrinthe immature (de 76 à 84 %). Leurs qualités intrinsèques (i.e., reproductibilité, fiabilité, facilité d’utilisation et faible coût) en font des outils de diagnose sexuelle adaptés à l’examen de restes osseux fragmentaires.
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Au nord, deuil dans les corons. Analyse anthropologique des victimes non identifiées de la catastrophe du Bois du Cazier (1956, Belgique).
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Le 8 août 1956, la catastrophe minière la plus meurtrière de Belgique se produisit au charbonnage du Bois du Cazier à Marcinelle : 262 mineurs de nationalités diverses (belge, italienne, allemande, algérienne, grecque, …) périrent à la suite d’une erreur humaine. Tous furent identifiés à l’exception de 17 d’entre eux. En octobre 2021, à la demande d’un descendant des victimes non identifiées, la Cellule d’Identification des Victimes de Catastrophes de la Police Fédérale a lancé une grande opération afin d’exhumer les restes des inconnus et de procéder à leur identification. Les analyses ont été réalisées par une équipe composée d’experts en pathologie médico-légale, en odontologie, en anthropologie, en archéologie et en ADN. Nous présentons ici les résultats de l’analyse anthropologique. Après l’inventaire des restes, le profil biologique de chaque individu a été reconstitué. La DSP a été utilisée pour déterminer le sexe et sept méthodes différentes ont été appliquées pour estimer l’âge au décès, y compris la cémentochronologie. La stature a été estimée à l’aide des équations de Raxter et d’Oliver, tandis que l’origine bio-géographique a été évaluée avec AncesTrees. La confrontation des registres ante-mortem (stature, âge, pathologies et particularités physiques) avec les données post-mortem nous a permis de proposer une identification pour huit individus. Quatre d’entre elles ont été confirmées par l’ADN. Au-delà de l’identification permettant de mener à bien ce devoir de mémoire envers les familles des victimes, cette mission nous a donné l’opportunité d’enregistrer des données précieuses pour d’autres domaines de recherche comme les traumatismes péri-mortem et les marqueurs d’activité résultant des pénibles conditions de travail des mineurs de fond.
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"By God, I’ve lost my leg!" : la découverte de restes humains aux abords de l’ambulance des Alliés à Waterloo et le projet Waterloo Uncovered
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2024, mis en ligne le 22 décembre 2023, consulté le 19 décembre 2024. URL : http://journals.openedition.org/bmsap/13003 ; DOI : https://doi.org/10.4000/bmsap.13003
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