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Sensitivity analysis of the dark spectrum fitting atmospheric correction for metre- and decametre-scale satellite imagery using autonomous hyperspectral radiometry
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2020/vanhellemont_sensitivity_2020a
The performance of the dark spectrum fitting (DSF) atmospheric correction algorithm is evaluated using matchups between metre- and decametre-scale satellite imagery as processed with ACOLITE and measurements from autonomous PANTHYR hyperspectral radiometer systems deployed in the Adriatic and North Sea. Imagery from the operational land imager (OLI) on Landsat 8, the multispectral instrument (MSI) on Sentinel-2 A and B, and the PlanetScope CubeSat constellation was processed for both sites using a fixed atmospheric path reflectance in a small region of interest around the system&\#x2019;s deployment location, using a number of processing settings, including a new sky reflectance correction. The mean absolute relative differences (MARD) between in situ and satellite measured reflectances reach <20&\#x0025; in the Blue and 11&\#x0025; in the Green bands around 490 and 560 nm for the best performing configuration for MSI and OLI. Higher relative errors are found for the shortest Blue bands around 440 nm (30&\#x2013;100&\#x0025; MARD), and in the Red-Edge and near-infrared bands (35&\#x2013;100&\#x0025; MARD), largely influenced by the lower absolute data range in the observations. Root mean squared differences (RMSD) increase from 0.005 in the NIR to about 0.015&\#x2013;0.020 in the Blue band, consistent with increasing atmospheric path reflectance. Validation of the Red-Edge and NIR bands on Sentinel-2 is presented, as well as for the first time, the Panchromatic band (17&\#x2013;26&\#x0025; MARD) on Landsat 8, and the derived Orange contra-band (8&\#x2013;33&\#x0025; MARD for waters in the algorithm domain, and around 40&\#x2013;80&\#x0025; MARD overall). For Sentinel-2, excluding the SWIR bands from the DSF gave better performances, likely due to calibration issues of MSI at longer wavelengths. Excluding the SWIR on Landsat 8 gave good performance as well, indicating robustness of the DSF to the available band set. The DSF performance was found to be rather insensitive to (1) the wavelength spacing in the lookup tables used for the atmospheric correction, (2) the use of default or ancillary information on gas concentration and atmospheric pressure, and (3) the size of the ROI over which the path reflectance is estimated. The performance of the PlanetScope constellation is found to be similar to previously published results, with the standard DSF giving the best results in the visible bands in terms of MARD (24&\#x2013;40&\#x0025; overall, and 18&\#x2013;29&\#x0025; for the turbid site). The new sky reflectance correction gave mixed results, although it reduced the mean biases for certain configurations and improved results for the processing excluding the SWIR bands, giving lower RMSD and MARD especially at longer wavelengths (>600 nm). The results presented in this article should serve as guidelines for general use of ACOLITE and the DSF.No publisherRBINS Publication(s)RBINS Collection(s)Open AccessImpact FactorPeer Review2021/03/31 12:55:00 GMT+1Article ReferenceCombined land surface emissivity and temperature estimation from Landsat 8 OLI and TIRS
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2020/vanhellemont_combined_2020
Remote sensing of Land Surface Temperature (LST) generally requires atmospheric parameters and the emissivity (∊) of the target to be estimated. The atmospheric up- and downwelling radiances and transmittance can be accurately modelled using radiative transfer models and profiles of relative humidity and temperature, either measured by radiosonde probes or retrieved from assimilating weather models. The estimation of ∊ is a large source of uncertainty in the resulting LST product, and there are various approaches using multi-angle observations, multispectral optical or multispectral thermal infrared imagery. In this paper, the estimation of LST from the Thermal InfraRed Sensor (TIRS) on board Landsat 8 is evaluated using more than 6 years of in situ temperature measurements from a network of 14 Autonomous Weather Stations (AWS) in Belgium. ∊ is estimated from concomitant atmospherically corrected imagery from the Operational Land Imager (OLI) using two new neural network approaches trained on ECOSTRESS spectra, and an established NDVI based method. Results are compared to using ∊=1 and the ASTER Global Emissivity Dataset. LST retrievals from L8/TIRS perform well for all emissivity data sources for 500 matchups with AWS subsoil temperature measurements: Mean Differences 0.8–3.7 K and unbiased Root Mean Squared Differences of 2.9–3.5 K for both B10 and B11. The use of unity emissivity gives the best results in terms of MD (0.8 K) and unb-RMSD (3 K). Similar ranges of unb-RMSD are found for 500 matchups with broadband radiometer temperatures (2.6–3.1 K), that have lower absolute MD values (−2.2–0.6 K). For the radiometer temperatures, both the neural net approaches gave lowest MD, in the best case ±0.1 K. The present investigation can hence recommend the neural nets to derive ∊ for the retrieval of LST over the AWS in Belgium. Using published matchup results from other authors however, no single source of ∊ data performed better than ∊=1, but this could be due to their low number of matchups. Further efforts for estimating representative pixel average emissivities are needed, and establishing a denser in situ measurement network over varied land use, with rather homogeneous land cover within a TIRS pixel, may aid further validation of a per pixel and per scene ∊ estimates from multispectral imagery. AWS data seems valuable for evaluation of satellite LST, with the advantage of a much lower cost and higher potential matchup density compared to conventional radiometers.No publisherRBINS Publication(s)RBINS Collection(s)Open AccessImpact FactorPeer Review2021/03/31 12:55:00 GMT+1Article ReferenceAutomated water surface temperature retrieval from Landsat 8/TIRS
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2020/vanhellemont_automated_2020
Satellite remote sensing of Land and Water Surface Temperature (L/WST) has many applications in studies of terrestrial and aquatic ecology. Retrieval of L/WST requires a well calibrated radiometer and an accurate atmospheric correction. In the present study, the performance of the Thermal InfraRed Sensor (TIRS) on board Landsat 8 is evaluated for the retrieval of L/WST. libRadtran is used to retrieve atmospheric correction parameters based on atmospheric profiles of relative humidity and temperature from three global atmospheric models. Performance of single band retrievals is compared to typical MODTRAN results from the Atmospheric Correction Parameter Calculator (ACPC) and a split-window approach. A multi-temporal land masking method using imagery from the Operational Land Imager (OLI) on board Landsat 8 is demonstrated, and is used to automatically classify imagery in the matchup dataset in three classes of cloud cover. Two sources of in situ data covering the Belgian Coastal Zone (BCZ) are used for validation of the L/WST product: (1) fixed locations in the Flemish Banks measurement network and (2) underway data from regular RV Belgica campaigns. In the present study the single band methods outperformed the split-window approach, and consistent retrievals are found for the MODTRAN and libRadtran simulations. Typical single band surface temperature retrievals in quasi cloud-free conditions have Root Mean Squared Differences (RMSD) of 0.7 K and 1 K for Bands 10 and 11 with low bias, depending on the method and atmospheric profile source. For imagery with scattered clouds, RMSD values increase to 1 K and 2 K respectively with an approximately 0.5 K cold bias, likely caused by cloud proximity. The calibration efforts combined into Collection 1 allows for accurate absolute surface temperature retrievals from B10 on Landsat 8/TIRS for homogeneous targets with known emissivity, such as liquid water. The method is adapted to global processing and can be used for Land Surface Temperature retrieval with a suitable source of emissivity data.No publisherRBINS Publication(s)RBINS Collection(s)Open AccessImpact FactorPeer Review2021/03/31 12:55:00 GMT+1Article ReferenceDNA taxonomy reveals high species diversity among the stygobiont genus Metastenasellus (Crustacea, Isopoda) in African groundwater
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2023/articlereference.2024-02-07.4856127075
No publisherRBINS Collection(s)PDF availableOpen AccessImpact FactorPeer ReviewInternational Redaction Board2024/02/07 10:50:00 GMT+1Article ReferenceÉtude des restes humains d’Atifu, un “guerrier” samoan décédé en Belgique au XIXe siècle
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2022/articlereference.2023-01-17.6734752761
Cette présentation s’intègre dans le projet HOME (Human Remains Origin(s) Multidisciplinary Evaluation) dont le but est de donner un cadre juridique aux collections de restes humains de Belgique et de standardiser les mesures à prendre en cas de demande de rapatriement. Nous avons réalisé l’étude des restes d’Atifu, “guerrier” de l’île Tutuila (Samoa) décédé à Bruxelles en avril 1890 et autopsié par Émile Houzé (membre fondateur de la société d’anthropologie de Bruxelles). Ce Samoan, après un séjour aux États-Unis d’août à octobre 1889, était arrivé en Europe avec huit de ses compatriotes et devait retourner chez lui trois ans plus tard. Houzé avait eu l’occasion de les examiner lors de leur passage au musée Castan à Bruxelles. Dans sa publication reprenant leur examen anthropométrique détaillé, il donne la cause de décès d’Atifu (la rougeole) et mentionne qu’il était également atteint de tuberculose. Les vestiges anthropologiques d’Atifu consistent en un squelette presque complet et une partie de sa peau (depuis la ceinture jusqu’aux genoux). Celle-ci fut prélevée en raison des tatouages qu’elle présentait et fut naturalisée. L’étude anthropologique confirme que le squelette appartient bien à un individu masculin de plus d’1,70 m et d’origine polynésienne. Notre analyse met également en évidence une fracture guérie du premier métacarpien gauche et une asymétrie marquée des clavicules. Nous n’avons toutefois observé aucun signe osseux de tuberculose. Un modèle 3D de la partie naturalisée a été réalisé en lumière blanche ainsi qu’en lumière infrarouge. L’utilisation de la lumière infrarouge a pour but d’apporter un regard nouveau sur les tatouages. Outre l’intérêt anthropologique généré par une telle étude, elle prend une dimension toute particulière lorsqu’elle est remise en contexte des “zoos humains” et de la poignante histoire de ces individus déplacés pour assouvir la curiosité d’un public en quête d’exotisme.No publisherOpen AccessAbstract of an Oral Presentation or a Poster2023/01/17 12:18:34 GMT+1Article ReferenceRevalidation of Enteromius alberti and presence of Enteromius cf. mimus (Cypriniformes: Cyprinidae) in the Lake Edward system, East Africa
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2020/articlereference.2020-12-01.4681425160
No publisherRBINS Publication(s)RBINS Collection(s)PDF availableOpen AccessImpact FactorPeer ReviewInternational Redaction Board2020/12/01 16:40:00 GMT+1Article ReferenceUnravelling the evolution of Africa’s drainage basins through a widespread freshwater fish, the African sharptooth catfish Clarias gariepinus
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2020/articlereference.2020-12-01.0215992122
No publisherPDF availableOpen AccessImpact FactorPeer ReviewInternational Redaction Board2020/12/01 16:50:00 GMT+1Article ReferencePhylogenomic Characterization of Lopma Virus and Praja Virus, Two Novel Rodent-Borne Arteriviruses
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2021-oa/articlereference.2022-01-19.7500240419
No publisherPDF availableOpen AccessImpact FactorPeer ReviewInternational Redaction Board2022/01/19 13:55:00 GMT+1Article ReferenceSARS-CoV-2 surveillance in Norway rats (Rattus norvegicus) from Antwerp sewer system, Belgium
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2021-oa/articlereference.2022-01-19.8155014864
No publisherPDF availableOpen AccessImpact FactorPeer ReviewInternational Redaction Board2022/01/19 14:25:00 GMT+1Article ReferenceDNA barcoding echinoderms of the East Coast of South Africa
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2017/inproceedingsreference.2018-02-08.0500128148
No publisherPeer ReviewAbstract of an Oral Presentation or a PosterOpen AccessImpact FactorRBINS Collection(s)2018/02/08 15:04:25 GMT+1Inproceedings ReferenceDNA barcoding halictine bee species from Europe and Africa
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2017/inproceedingsreference.2018-02-08.7053529390
No publisherPeer ReviewAbstract of an Oral Presentation or a PosterOpen AccessImpact FactorRBINS Collection(s)2018/02/08 15:09:34 GMT+1Inproceedings ReferenceWest African Manatee Trichechus senegalensis (LINK, 1795) in the Estuary of the Congo River (Democratic Republic of the Congo): Review and Update
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2017/articlereference.2018-02-15.9734928150
No publisherPeer ReviewOpen AccessInternational Redaction Board2018/02/15 14:45:00 GMT+1Article ReferenceImpact of Laying Date and Fire Ants on Hatchlings of Chelonoidis porteri on Santa Cruz Island, Galápagos, Ecuador
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2018/articlereference.2024-03-29.3080826742
Chelonoidis land tortoises are iconic species endemic to the Galápagos Islands of Ecuador. Their populations have been dramatically reduced by human activities in the last three centuries, including indirect effects such as the introduction of invasive species. We investigated the mortality of eggs and hatchlings in 48 nests of Chelonoidis porteri on Santa Cruz Island with regard to various mortality causes such as the occurrence of fire ants and the date of laying. The average mortality rate was 0.56. Tropical Fire Ants (Solenopsis geminata) were present within 1 m of 75% of the C. porteri nests, and we encountered fire ants in 12.5% of excavated nests. We found no relationship between Tropical Fire Ant abundance and C. porteri egg and hatchling survivorship. We observed no signs of mold inside the nests. We determined that early deposition dates were associated with lower clutch survival and identified egg development as the critical life stage. Finally, we discuss the potential impacts of fire ants and climate change on tortoise survival and reproduction and stress the importance of taking these factors into account for the conservation of the endemic land tortoises of the GalápagosNo publisherRBINS Publication(s)RBINS Collection(s)PDF availableOpen AccessPeer Review2024/03/29 10:00:06 GMT+1Article ReferenceIntroduction history and genetic diversity of the invasive ant Solenopsis geminata in the Gala´pagos Islands
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2018/articlereference.2024-03-29.8189335631
The Gala´pagos Islands constitute one of the most pristine tropical systems on Earth. However, the complex and fragile equilibrium of native species is threatened by invasive species, among which is one of the most successful ants in the world, the tropical fire ant, Solenopsis geminata. We characterized the genetic structure and diversity of populations of S. geminata in the Galapagos Islands and unravelled the archipelago colonization by combining Bayesian clustering methods and coalescent-based scenario testing. Using 12 microsatellite markers and one mitochondrial DNA fragment (COI), we analysed individuals collected in all main invaded islands of the archipelago and from the native areas in Costa Rica and mainland Ecuador. We also used mitochondrial DNA to infer evolutionary relationships of samples collected in Galapagos Islands, Ecuador, Costa Rica and other Latin American countries. Our results showed that genetic diversity was significantly lower in Galapagos Islands and mainland Ecuador populations when compared to Costa Rican populations, and that samples from Galapagos Islands and mainland Ecuador (Guayaquil) clustered in a single group and all share a single mtDNA haplotype. Approximate Bayesian Computation favoured a scenario assuming that populations from Galapagos Islands diverged from mainland Ecuador. The city of Guyaquil, an obligatory hub for tourism and trade, could act as a bridgehead.No publisherRBINS Publication(s)RBINS Collection(s)PDF availableOpen AccessPeer Review2024/03/29 10:12:48 GMT+1Article ReferenceFirst record of the invasive longhorn crazy ant, Paratrechina longicornis (Latreille, 1802) (Hymenoptera: Formicidae) from Mt. Elgon, eastern Uganda
https://biblio.naturalsciences.be/library-1/rbins-staff-publications-2019/articlereference.2024-03-29.6852772339
We report the first observation of the invasive longhorn crazy ant (Paratrechina longicornis) in the Mount Elgon region of eastern Uganda. About 43 000 ants were sampled in 256 locations throughout the Ugandan foot slopes of Mt. Elgon in the years 2014, 2015 and 2016. We found P. longicornis in five locations in and around the town of Budadiri, Sironko district. The visual species identification was confirmed by COI gene-based DNA barcoding. That this species was found in only a small area suggests that it has only been recently introduced. The impact that P. longicornis will have on the local agricultural system or the biodiversity within the Mount Elgon National Park remains unclear. The Mt. Elgon region is a unique key biodiversity area where baseline data can be collected now to quantify the effects of P. longicornis as it increases its distribution within the regionNo publisherPeer ReviewOpen AccessPDF available2024/03/29 10:23:06 GMT+1Article Reference