Skip to content. | Skip to navigation

Personal tools

You are here: Home

Search results

RSS Subscribe to an always-updated RSS feed.

4424 items matching your search terms.
Filter the results.
Item type



































New items since



Sort by relevance · date (newest first) · alphabetically
Article Reference A Tale of Three Oceans — Taxonomy of the Holothuria (Thymiosycia) arenicola Semper, 1868 complex (Echinodermata: Holoturoidea: Holothuriidae)
The ubiquitous sea cucumber Holothuria (Thymiosycia) arenicola Semper, 1868, externally characterized by a double row of dark blotches of various sizes on its dorsal body wall and a cryptic behaviour, is generally assumed to have a wide tropical distribution, although it has not been reported from the Eastern tlantic. Careful morphological examination, with emphasis on the ossicle assemblage, of type and non-type H. arenicola specimens sampled in the Indian, Pacific and tlantic Ocean, its subjective synonyms and species with a similar colouration and habit, revealed that H. arenicola is often confused with other species. This paper formally separates the different species in the H. arenicola complex, one of them being a species new to science: Holothuria (Thymiosycia) kerriensis sp. nov. dditionally, we describe two other species that are often confused with H. arenicola: Holothuria (Lessonothuria) gracilis Semper, 1868 and H. (Thymiosycia) strigosa Selenka, 1867. The H. arenicola complex per se is keyed-out, with the ossicle assemblage of the musculature being recognised as an important, previously largely neglected, guide. This contribution highlights the importance of building and curating well-maintaned natural history collections to understand biodiversity through time and space.
Located in Library / RBINS Staff Publications 2024
Article Reference The Population History of Domestic Sheep Revealed by Paleogenomes
Sheep was one of the first domesticated animals in Neolithic West Eurasia. The zooarchaeological record suggests that domestication first took place in Southwest Asia, although much remains unresolved about the precise location(s) and timing(s) of earliest domestication, or the post-domestication history of sheep. Here, we present 24 new partial sheep paleogenomes, including a 13,000-year-old Epipaleolithic Central Anatolian wild sheep, as well as 14 domestic sheep from Neolithic Anatolia, two from Neolithic Iran, two from Neolithic Iberia, three from Neolithic France, and one each from Late Neolithic/Bronze Age Baltic and South Russia, in addition to five present-day Central Anatolian Mouflons and two present-day Cyprian Mouflons. We find that Neolithic European, as well as domestic sheep breeds, are genetically closer to the Anatolian Epipaleolithic sheep and the present-day Anatolian and Cyprian Mouflon than to the Iranian Mouflon. This supports a Central Anatolian source for domestication, presenting strong evidence for a domestication event in SW Asia outside the Fertile Crescent, although we cannot rule out multiple domestication events also within the Neolithic Fertile Crescent. We further find evidence for multiple admixture and replacement events, including one that parallels the Pontic Steppe-related ancestry expansion in Europe, as well as a post-Bronze Age event that appears to have further spread Asia-related alleles across global sheep breeds. Our findings mark the dynamism of past domestic sheep populations in their potential for dispersal and admixture, sometimes being paralleled by their shepherds and in other cases not.
Located in Library / RBINS Staff Publications 2023
Inproceedings Reference Canopy laser scanning to study the complex architecture of large old trees
Canopy laser scanning to study the complex architecture of large old trees Barbara D'hont1 , Professor Kim Calders1 , Professor Alexandre Antonelli6 , Dr. Thomas Berg7 , Dr. Karun Dayal1 , Dr. Leonard Hambrecht5 , Dr. Maurice Leponce2,3, Prof. Arko Lucieer5 , Olivier Pascal4 , Professor Pasi Raumonen8, Professor Hans Verbeeck1 1Q-ForestLab, Department of Environment, Ghent University, Ghent, Belgium, 2Royal Belgian Institute of Natural Sciences, Brussels, Belgium, 3Université Libre de Bruxelles, Brussels, Belgium, 4Fonds de Dotation Biotope Pour La Nature, France, 5School of Geography, Planning, and Spatial Sciences, University of Tasmania, , Australia, 6Royal Botanic Gardens, Kew, Richmond, Surrey, United Kingdom, 7ARAÇÁ Project, Nova Friburgo, Rio de Janeiro, Brazil, 8Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland Large trees are keystone structures providing multiple ecosystem functions in forests all around the world: they disproportionately contribute to forest biomass and biodiversity. Large trees can have an extremely complex structure, housing many epiphytes on their stem and branches. High point-density 3D point clouds, in which leaves and epiphytes in the tree can be distinguished, are useful to make the link between the distribution of organisms on the tree, the tree architecture and its microclimate. In addition, a comprehensive branching model can improve above ground biomass (AGB) estimates. Highly detailed, complete point clouds of large trees are, however, exceptionally difficult to derive. With terrestrial laser scanning, the state-of-the-art method to capture 3D tree structure, the plant material blocks the view of (or, occludes) the top part of the dense crown. Drone or airborne laser scanning data on the other hand, lacks detail in the subcanopy. Combining these two methods minimises occlusion; however, increased distance from the tree to the scanner still leads to a relatively low resolution of the canopy point clouds. To improve the level of precision of the tree point clouds, we introduce a new concept, called canopy laser scanning (CLS). With CLS, a laser scanner is operated statically inside the tree canopy, reducing the distance between the area of interest and the instrument. We lifted a high-end laser scanner (RIEGL vz-400(i)) inside the canopy of six large emergent trees. Four of these trees are located in different types of tropical rainforests in Colombia, Brazil and Peru. They are part of biodiversity programs in which organisms and their spatial distributions are studied (Life On Trees, Araçá). The two other trees are famous giants located in the wet temperate eucalypt forests of southern Tasmania. We will present the practical aspects of CLS, evaluate the extra value of using canopy scans, looking at occlusion and point cloud precision, estimate epiphyte cover and AGB. We demonstrate that canopy laser scanning opens up new opportunities in sciences in which multi-disciplinary teams perform in depth research on large individual trees.
Located in Library / RBINS Staff Publications 2023
Article Reference Contribution of omnidirectional flight traps to assess the ant (Hymenoptera: Formicidae) diversity in an agroforestry system.
Located in Library / RBINS Staff Publications 2023
Article Reference Unveiling the above-ground eukaryotic diversity supported by individual large old trees : the “Life on Trees” integrative protocol
Large tropical trees are rightly perceived as supporting a plethora of organisms. However, baseline data about the variety of taxa coexisting on single large tropical trees are lacking and prevent a full understanding of both the magnitude of biodiversity and the complexity of interactions among organisms in tropical rainforests. The two main aims of the research program “Life on Trees” (LOT) are (1) to establish baseline knowledge on the number of eukaryote species supported/hosted by the above-ground part of a single tropical tree and (2) to understand how these communities of organisms are assembled and distributed on or inside the tree. To achieve the first goal, we integrated a set of 36 methods for comprehensively sampling eukaryotes (plants, fungi, animals, protists) present on a tropical tree. The resulting LOT protocol was conceived and implemented during projects in the Andean Amazon region and is proposed here as a guideline for future projects of a similar nature. To address the second objective, we evaluated the microclimatic differences between tree zones and tested state-of-the-art terrestrial laser scanning (TLS) and positioning technologies incorporating satellite and fixed base station signals (dGNSS). A marked variation in temperature and relative humidity was detected along a 6-zones Johansson scheme, a tree structure subdivision system commonly used to study the stratification of epiphytic plants. Samples were collected from these six zones, including three along the trunk and three in the canopy. To better understand how different tree components (e.g., bark, leaves, fruits, flowers, dead wood) contribute to overall tree biodiversity, we categorized observations into communities based on Johansson zones and microhabitats. TLS was an essential aid in understanding the complex tree architecture. By contrast, the accuracy of positioning samples in the tree with dGNSS was low. Comprehensively sampling the biota of individual trees offers an alternative to assessing the biodiversity of fewer groups of organisms at the forest scale. Large old tropical trees provide a wealth of microhabitats that encompass a wide range of ecological conditions, thereby capturing a broad spectrum of biodiversity.
Located in Library / RBINS Staff Publications 2023
Inproceedings Reference Large old tropical trees as keystone biodiversity structures: the Life on Trees program
Association for Tropical Biology and Conservation annual meeting https://www.atbc2024.org Large old tropical trees as keystone biodiversity structures: the Life on Trees program Leponce Maurice1, Basset Yves2, Aristizábal-Botero Ángela1, Albán Castillo Joaquina3, Aguilar Rengifo Guillermo4, Barbut Jérôme5, Buyck Bart5, Butterill Phil6, Calders Kim7, Carrias Jean-François8, Catchpole Damien9, D’hont Barbara7, Delabie Jacques10, Drescher Jochen11, Ertz Damien12, Heughebaert André13, Hofstetter Valérie14, Leroy Céline15, Leveque Antoine16, Macedo Cuenca Victor4, Melki Frédéric17, Michaux Johan18, Ocupa Horna Luis19, Pillaca Huacre Luis3, Poirier Eddy20, Ramage Thibault21, Rougerie Rodolphe5, Rouhan Germinal5, Rufray Vincent17, Salas Guererro Marcos4, Scheu Stefan11, Schmidl Jürgen22, Silva Dávila Diana3, Valenzuela Gamarra Luis23, Vanderpoorten Alain18, Villemant Claire5, Youdjou Nabil1, Pascal Olivier17 1 Royal Belgian Institute of Natural Sciences, Vautier st. 29, Brussels, 1000, Belgium; 2 Smithsonian Tropical Research Institute, Panama; 3 Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, Lima, Peru; 4 Servicio Nacional de Áreas Naturales Protegidas por el Estado, Ministerio del Ambiente, Peru; 5 Muséum national d'Histoire naturelle, Paris, France; 6 Biology Centre, Czech Academy of Sciences, České Budějovice,Czech Republic; 7 Ghent University, Belgium; 8 Université Clermont-Auvergne, Clermont-Ferrand, France; 9 Independent Consultant, Lima, Peru; 10 Centro de Pesquisas do Cacau – CEPEC, Itabuna, Brasil; 11 Göttingen University, Germany; 12 Meise Botanic Garden, Belgium; 13 Belgian Biodiversity Platform, Brussels, Belgium; 14 AGROSCOPE, Nyon, Switzerland; 15 AMAP (Univ. Montpellier, CIRAD, CNRS, INRAE, IRD), Montpellier, France; 16 PatriNat (OFB-CNRS-MNHN), Paris, France; 17 Fonds de Dotation Biotope Pour La Nature, Mèze, France; 18 Université de Liège, Belgique; 19 Centro de Investigación en Biología Tropical y Conservación, Piura, Perú ; 20 Independent entomologist, Cayenne, Guyane ; 21 Independent entomologist, Concarneau, France ; 22 Universität Erlangen-Nürnberg, Germany. ; 22 Jardín Botánico de Missouri, Peru E-mail: (presenting author): mleponce@naturalsciences.be The aim of the Life on Trees (LOT, www.lifeontrees.org) program is to generate baseline knowledge about the number of eukaryotic species that a single large mature tropical tree can host and to understand how these communities of organisms are assembled. The program is being undertaken in the Andean Amazon biodiversity hotspot. Our first project, LOT01 in the Andean foothills in 2022, located at 400m a.s.l., involved the study of a spectacular Dussia tessmannii tree (Fabaceae), towering at 50 meters in height and 45m wide. Our second project, LOT02 in the Andes in 2023, at 2450m a.s.l., focused on a 32-meter-tall Ficus americana subsp. andicola. Surveys were carried out by professional climbers, guided by experts of the different eukaryotic groups studied (plants, fungi, animals, protists). To better understand the contribution of different tree components (bark, leaves, fruits, flowers, living and dead wood) to overall tree biodiversity, we partitioned observations into communities based on vertical strata or microhabitat and will examine similarities and nestedness in the composition of these communities. Initial findings indicate that significant diversity is harbored by the individual tree at both locations (e.g., LOT01 vs LOT02: 42 vs 114 orchid species, 28 vs 28 fern species, 200+ vs 300+ bryophyte species, and 180 vs 100+ lichen species identified). These figures set world records for their respective elevations. This confirms that large old tropical trees are important pools of biodiversity, probably related to the variety of local microhabitats and tree age.
Located in Library / RBINS Staff Publications 2023
Article Reference Development of a Biofertilizer from Plant Growth Promoting Rhizobacteria Isolated from Millipede Fecal Pellets
Located in Library / RBINS Staff Publications 2024
Inbook Reference The faunal remains in Bukova Pusta IV
Located in Library / RBINS Staff Publications 2023
Article Reference Stick insects from Vietnam: The new genus Mycovartes gen. nov., with two new species and two new species of Neooxyartes Ho, 2018 (Phasmida: Lonchodidae: Necrosciinae)
Located in Library / RBINS Staff Publications 2023
Article Reference Control of simulated ocean ecosystem indicators by biogeochemical observations
To protect marine ecosystems threatened by climate change and anthropic stressors, it is essential to operationally monitor ocean health indicators. These are metrics synthetizing multiple marine processes relevant to the users of operational services. Here we assess if selected ocean indicators simulated by operational models can be controlled (here meaning constrained effectively) by biogeochemical observations, by using a newly proposed methodological framework. The method consists in firstly screening the sensitivities of the indicators with respect to the initial conditions of the observable variables. These initial conditions are perturbed stochastically in Monte Carlo simulations of one-dimensional configurations of a multi-model ensemble. Then, the models are applied in three-dimensional ensemble assimilation experiments, where the reduction of the ensemble variance corroborates the controllability of the indicators by the observations. The method is applied for ten relevant ecosystem indicators (ranging from inorganic chemicals to plankton production), seven observation types (representing data from satellite and underwater platforms), and an ensemble of five biogeochemical models of different complexity, employed operationally by the European Copernicus Marine Service. We demonstrate that all the indicators are controlled by one or more types of observations. In particular, the indicators of phytoplankton phenology are controlled and improved by the merged observations from the surface ocean colour and chlorophyll profiles. Similar observations also control and reduce the uncertainty of the plankton community structure and production. However, the uncertainty of the trophic efficiency and POC increases when assimilating chlorophyll-a data, though observations were not available to assess whether that was due to a worsen model skill. We recommend that the assessment of controllability proposed here becomes a standard practice in designing operational monitoring, reanalysis and forecast systems, to ultimately provide the users of operational services with more precise estimates of ocean ecosystem indicators.
Located in Library / RBINS Staff Publications 2023