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Inproceedings Reference Understanding the Earth for the people that inhabit it: Belgian and Flemish institutes joining hands in the framework of GeoERA
Societies rely on a secure, responsible and affordable supply of resources to meet their basic needs, in order to live life in a safe and healthy environment. The natural resources from the subsurface, i.e. groundwater, geo-energy and raw materials, represent essential elements in this provision. Safety from catastrophic events, such as those linked to earthquakes, or continuous ones, such as subsidence, can be improved by understanding the causes, frequency or rates of processes, and their impacts. These applied goals require a correct and intimate understanding of the regional geology. While geological surveys and other organisations working on the subsurface were initially very much focussed on national supply of resources, issues such as environmental consequences have increasingly come to the forefront. Europe has now become the relevant scale when considering import or export of raw materials. This results in an increasing pressure to place regional knowledge in a cross-border or pan-European context. To support cross-border, thematic research, the European Commission issued a call for an ERA-NET to which a consortium of 33 national and 15 regional organisations responded. An ERA-NET is a project that internally organises a competitive call for projects. In 2017, GeoERA officially started. After an internal call for project proposals, 15 projects were approved that receive about 30% top-up funding under H2020. The remainder of the resources comes from different sources of funding, totalling the budget to 30.3 M€. Projects are funded under the themes Geo-Energy, Raw Materials, and Ground Water. A fourth theme, Data Infrastructure, will realise the shared ambition of all projects to jointly store and publish their data on-line as an extension of country specific databases (e.g. DOV, Gisel). The starting date of the GeoERA research projects granted funding is 1 July 2018, and the projects will run for three years. Belgian and Flemish institutes involved are: the Geological Survey of Belgium (GSB), the Bureau for Environment and Spatial Development – Flanders (VPO), the Flemish Institute for Technological Research (VITO), Flanders Environment Agency (VMM) and the Belgian Nuclear Research Centre (SCK-CEN). Although not involved as official partner, the Geological Survey of Wallonia supports the initiative by means of data provision. The GSB is involved in seven projects, VITO, as linked third partyof VPO in two projects, VPO itself in one project, and VMM in three projects of which two will be elaborated in close cooperation with SCK-CEN, the linked third party of VMM. Together with VPO-VITO, the GSB is coordinator of GeoConnect³d, a strongly crossthematic Geo-Energy project that aims to disclose geological information for policy support and subsurface management. Other funded Geo-Energy projects in which the GSB is involved are MUSE, a project on shallow geothermal energy in European urban areas, and HIKE, on induced hazards and impacts related to the exploitation of subsurface resources throughout Europe. Under the theme Raw Materials the GSB participates in Mintell4EU, which aims to improve the European knowledge base on raw materials, as well as in FRAME, that is designed to research the critical and strategic raw materials in Europe. For groundwater the GSBeis directly involved in the HOVER project, mainly on data collection related to natural springs. VMM is also involved in HOVER, but in a work package on the distinction between anthropogenic and geogenic causes of groundwater contamination (especially how to deal with it in groundwater policy and management) with substances like arsenic. Moreover, VMM is, together with SCK-CEN, participating and leading a work package in two other Ground Water projects, namely VoGERA on investigating the vulnerability of shallow groundwater resources to deep subsurface energy-related activities, and RESOURces about harmonization of information about Europe’s groundwater resources through cross-border demonstration projects. Finally, the GIP-P project, where the GSB is work package leader, will establish a common platform for organising, disseminating and sustaining the digital results of the GeoERA projects. GeoERA is more than the occasional H2020 project. The combined efforts by the Belgian and Flemish institutes to engage in 10 different projects is a cooperative approach, with clear ambitions to demonstrate how cross-thematic research links can be set-up by different institutes, and how these can provide fruitful results for policy makers and other stakeholders. This is a notable effort in a project that is about establishing and demonstrating the added value of a European geological surveys research area, and finding how to optimally link regional, national and European efforts and interests. Acknowledgements This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme under grant agreement No 731166
Located in Library / RBINS Staff Publications 2018
Inproceedings Reference Tracing ancient DNA of Foraminifera in tsunami deposits (GEN-EX)
1. Background Tsunami deposits provide information on the long-term frequency-magnitude patterns of events, which may not be covered by the historical and instrumental record. Such information is crucial for the assessment of coastal hazards and mitigation measures against the loss of life and assets. In order to identify tsunami deposits in the coastal sedimentary record and to infer tsunami characteristics, a wide range of proxies has been established based on studies of recent tsunami deposits. Microfossils (e.g. foraminifera, ostracods, diatoms) are often used to recognize tsunami deposits, and to differentiate them from those of other processes. In terms of foraminifera, tsunami deposits mostly contain allochthonous associations dominated by benthic intertidal to inner shelf taxa. Specimens may originate from outer shelf to bathyal depths; even planktonic forms may occur. Furthermore, changes in test numbers, taphonomy, size or adult/juvenile ratios compared to background sedimentation are common (Pilarczyk et al., 2014; Engel et al., 2016). However, dissolution of microfossils often prevent identification and diminish their value as a proxy (Yawsangratt et al., 2012). 2. Study goals and concept To address the problem of post-depositional alteration of microfossil associations in tsunami deposits, high-throughput metagenomic sequencing techniques are applied by the GEN-EX project to identify marine organisms in onshore sand layers based on their DNA remains. Metagenomics (or environmental genomics) is related to sequencing DNA directly from the environmental samples, where the genetic material may have been preserved in sedimentary records covering tens of thousands of years. Metagenomics is an emerging technique in environmental research and is used to characterize the diversity of bacterial communities but also higher organisms such as animals, plants and fungi of recent and ancient origin in a variety of settings, including ice, lake sediments, soils, cave deposits, and various types of surface waters. Metagenomics can also be used to detect cryptic diversity, ultimately providing more accurate estimates of biodiversity (Pedersen et al., 2015). Among the broad range of organisms, foraminifera (single-celled protists) show a water depth-related zonation in subtidal environments, and are the first to have been identified successfully in palaeo- tsunami deposits by their DNA (SzczuciĔski et al., 2016). The main objectives of GEN-EX include: quantifying the relationship between water depth and the distribution of different foraminiferal taxa where known tsunami deposits are present, using a comparative classic micropalaeontological and metagenomic approach; assessing the potential (based on both approaches) for identifying key indicator species in tsunami deposits in different coastal settings; and establishing how metagenomic approaches can contribute to the differentiation between storm and tsunami deposits. 3. DNA extraction DNA will be analysed in two types of material – modern extant foraminifera and sediments (tsunami deposits and adjacent layers). DNA extracted from single foraminiferal specimens will be followed by whole genome amplification to obtain sufficient DNA concentrations. Either part of the nuclear 18S rRNA region or the mitochondrial genome (mtDNA) will be amplified, before high-throughput sequencing of the amplicons. Sequences will be edited and aligned, and their identity verified by BLAST (Altschul et al., 1990) searches in Genbank and the Forambarcoding project (http://forambarcoding.unige.ch). A project-specific database of 18S and mtDNA data of the identified recent foraminifera will be constructed. Sampling of tsunami deposits and DNA extraction follows the protocol of SzczuciĔski et al. (2016). Suitable primers will be developed from our reference database of recent foraminifera to amplify overlapping short fragments of 18S or mtDNA of the target species. Amplicon concentration will be quantified and prepared for high-throughput sequencing. Sequence data will be analysed with different bioinformatics pipelines (e.g. QIIME), including quality control, removal of barcodes and adaptors, identification and removal of chimeric and redundant sequences, and comparisons with our own and open access databases of 18S data for defining Operational Taxonomic Units with 95% and 97% similarity cut-offs. 4. Study area One of the study areas, where the eDNA approach is applied, are the Shetland Islands, exposed to the mega-tsunami triggered by the early Holocene Storegga submarine slide off the coast of Norway. Sediment run-up of more than 25 m left a distinct landward-thinning sand layer with an erosive lower contact, large rip-up clasts, fining-upward sequences and marine diatoms in near-shore lakes and coastal peat lowlands. In addition to sediments associated with the Storegga tsunami, two younger tsunami deposits dated to c. 5 and 1.5 ka (Bondevik et al., 2005) are investigated. Sampling for the planned foraminiferal analyses and eDNA extraction of the deposits and their source area, comprising along the beach and subtidal area to the central shelf area is scheduled for the second half of March 2018. 5. Acknowledgements Funding is kindly provided by a BELSPO BRAIN-be pioneer grant (BR/175/PI/GEN-EX). 6. References Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J., 1990. Basic local alignment search tool. Journal of Molecular Biology, 215, 403–410. Bondevik, S., Mangerud, J., Dawson, S., Dawson, A. & Lohne, Ø., 2005. Evidence for three North Sea tsunamis at the Shetland Islands between 8000 and 1500 years ago. Quaternary Science Reviews, 24, 1757–1775. Engel, M., Oetjen, J., May, S.M. & Brückner, H., 2016. Tsunami deposits of the Caribbean – Towards an improved coastal hazard assessment. Earth-Science Reviews, 163, 260–296. Pedersen, M.W., Overballe-Petersen, S., Ermini, L., Sarkissian, C.D., Haile, J., Hellstrom, M., Spens, J., Thomsen, P.F., Bohmann, K., Cappellini, E., Bærholm Schnell, I., Wales, N.A., Carøe, C., Campos, P.F., Schmidt, A.M.Z., Gilbert, M.T.P., Hansen, A.J., Orlando, L. & Willerslev, E., 2015. Ancient and modern environmental DNA. Philosophical Transactions of the Royal Society B, 370, 20130383. Pilarczyk, J.E., Dura, T., Horton, B.P., Engelhart, S.E., Kemp, A.C. & Sawai, Y., 2014. Microfossils in coastal environments as indicators of paleo-earthquakes, tsunamis and storms. Palaeogeography, Palaeoclimatology, Palaeoecology, 413, 144–157. SzczuciĔski, W., Pawłowska, J., Lejzerowicz, F., Nishimura, Y., KokociĔski, M., Majewski, W., Nakamura, Y. & Pawlowski, J., 2016. Ancient sedimentary DNA reveals past tsunami deposits. Marine Geology, 381, 29–33. Yawsangratt, S., SzczuciĔski, W., Chaimanee, N., Chatprasert, S., Majewski, W. & Lorenc, S., 2012. Evidence of probable paleotsunami deposits on Kho Khao Island, Phang Nga Province, Thailand. Natural Hazards, 63, 151–163.
Located in Library / RBINS Staff Publications 2018
Inproceedings Reference About canals and qanats: long-term human impact on Late Quaternary alluvial landscapes
Located in Library / RBINS Staff Publications