-
BIRDIE: A data pipeline to inform wetland and waterbird conservation at multiple scales
-
Introduction: Efforts to collect ecological data have intensified over the last decade. This is especially true for freshwater habitats, which are among the most impacted by human activity and yet lagging behind in terms of data availability. Now, to support conservation programmes and management decisions, these data need to be analyzed and interpreted; a process that can be complex and time consuming. The South African Biodiversity Data Pipeline for Wetlands and Waterbirds (BIRDIE) aims to help fast and efficient information uptake, bridging the gap between raw ecological datasets and the information final users need. <br /><br /> Methods: BIRDIE is a full data pipeline that takes up raw data, and estimates indicators related to waterbird populations, while keeping track of their associated uncertainty. At present, we focus on the assessment of species abundance and distribution in South Africa using two citizen-science bird monitoring datasets, namely: the African Bird Atlas Project and the Coordinated Waterbird Counts. These data are analyzed with occupancy and state-space models, respectively. In addition, a suite of environmental layers help contextualize waterbird population indicators, and link these to the ecological condition of the supporting wetlands. Both data and estimated indicators are accessible to end users through an online portal and web services. <br /><br /> Results and discussion: We have designed a modular system that includes tasks, such as: data cleaning, statistical analysis, diagnostics, and computation of indicators. Envisioned users of BIRDIE include government officials, conservation managers, researchers and the general public, all of whom have been engaged throughout the project. Acknowledging that conservation programmes run at multiple spatial and temporal scales, we have developed a granular framework in which indicators are estimated at small scales, and then these are aggregated to compute similar indicators at broader scales. Thus, the online portal is designed to provide spatial and temporal visualization of the indicators using maps, time series and pre-compiled reports for species, sites and conservation programmes. In the future, we aim to expand the geographical coverage of the pipeline to other African countries, and develop more indicators specific to the ecological structure and function of wetlands.
Located in
Library
/
RBINS Staff Publications 2023
-
Mapping and understanding Earth: Open access to digital geoscience data and knowledge supports societal needs and UN sustainable development goals
-
Located in
Library
/
RBINS Staff Publications 2024
-
Deterministic and stochastic effects drive the gut microbial diversity in cucurbit-feeding fruit flies (Diptera, Tephritidae)
-
Located in
Library
/
RBINS Staff Publications 2025
-
Maintaining taxonomic accuracy in genetic databases: A duty for taxonomists— Reanalysis of the DNA sequences from Mercan et al. (2024) on the genus Potamothrix (Annelida, Clitellata) in Turkish lakes
-
Located in
Library
/
RBINS Staff Publications 2025
-
HYPSTAR: a hyperspectral pointable system for terrestrial and aquatic radiometry
-
pOptical Earth observation satellites provide vast amounts of data on a daily basis. The top-of-atmosphere radiance measured by these satellites is usually converted to bottom-of-atmosphere radiance or reflectance which is then used for deriving numerous higher level products used for monitoring environmental conditions, climate change, stock of natural resources, etc. The increase of available remote sensing data impacts decision-making on both regional and global scales, and demands appropriate quality control and validation procedures. A HYperspectral Pointable System for Terrestrial and Aquatic Radiometry (HYPSTAR$^®$) has been designed to provide automated, italicin-situ/italic multiangular reflectance measurements of land and water targets. HYPSTAR-SR covers 380–1020 nm spectral range at 3 nm spectral resolution and is used at water sites. For land sites the HYPSTAR-XR variant is used with the spectral range extended to 1680 nm at 10 nm spectral resolution. The spectroradiometer has multiplexed radiance and irradiance entrances, an internal mechanical shutter, and an integrated imaging camera for capturing snapshots of the targets. The spectroradiometer is mounted on a two-axis pointing system with 360° range of free movement in both axes. The system also incorporates a stable light emitting diode as a light source, used for monitoring the stability of the radiometric calibration during the long-term unattended field deployment. Autonomous operation is managed by a host system which handles data acquisition, storage, and transmission to a central WATERHYPERNET or LANDHYPERNET server according to a pre-programmed schedule. The system is remotely accessible over the internet for configuration changes and software updates. The HYPSTAR systems have been deployed at 10 water and 11 land sites for different periods ranging from a few days to a few years. The data are automatically processed at the central servers by the HYPERNETS processor and the derived radiance, irradiance, and reflectance products with associated measurement uncertainties are distributed at the WATERHYPERNET and LANDHYPERNET data portals./p
Located in
Library
/
RBINS Staff Publications 2025
-
Complete Characterization of Ocean Color Radiometers
-
Located in
Library
/
RBINS Staff Publications 2024
-
WATERHYPERNET: a prototype network of automated in situ measurements of hyperspectral water reflectance for satellite validation and water quality monitoring
-
pThis paper describes a prototype network of automated italicin situ/italic measurements of hyperspectral water reflectance suitable for satellite validation and water quality monitoring. Radiometric validation of satellite-derived water reflectance is essential to ensure that only reliable data, e.g., for estimating water quality parameters such as chlorophyll italica/italic concentration, reach end-users. Analysis of the differences between satellite and italicin situ/italic water reflectance measurements, particularly unmasked outliers, can provide recommendations on where satellite data processing algorithms need to be improved. In a massively multi-mission context, including Newspace constellations, hyperspectral missions and missions with broad spectral bands not designed for “water colour”, the advantage of hyperspectral over multispectral italicin situ/italic measurements is clear. Two hyperspectral measurement systems, PANTHYR (based on the mature TRIOS/RAMSES radiometer) and HYPSTAR$^®$ (a newly designed radiometer), have been integrated here in the WATERHYPERNET network with SI-traceable calibration and characterisation. The systems have common data acquisition protocol, data processing and quality control. The choice of validation site and viewing geometry and installation considerations are described in detail. Three demonstration cases are described: 1. PANTHYR data from two sites are used to validate Sentinel-2/MSI (A&B); 2. HYPSTAR$^®$ data at six sites are used to validate Sentinel-3/OLCI (A&B); 3. PANTHYR and HYPSTAR$^®$ data in Belgian North Sea waters are used to monitor phytoplankton parameters, including italicPhaeocystis globosa/italic, over two 5 month periods. Conclusion are drawn regarding the quality of Sentinel-2/MSI and Sentinel-3/OLCI data, including indications where improvements could be made. For example, a positive bias (mean difference) is found for ACOLITE\_DSF processing of Sentinel-2 in clear waters (Acqua Alta) and clues are provided on how to improve this processing. The utility of these italicin situ/italic measurements, even without accompanying hyperspectral satellite data, is demonstrated for phytoplankton monitoring. The future evolution of the WATERHYPERNET network is outlined, including geographical expansion, improvements to hardware reliability and to the measurement method (including uncertainty estimation) and plans for daily distribution of near real-time data./p
Located in
Library
/
RBINS Staff Publications 2025
-
First record of a proseriate flatworm predating on a rhabdocoel (Platyhelminthes: Proseriata and Rhabdocoela)
-
Located in
Library
/
RBINS Staff Publications 2024
-
Assessing hydrogeological hazards in the post-mining region in Saint-Vaast, Belgium: insights from three decades of SAR data and piezometric analysis
-
This study assesses hydrogeological hazards in the Saint-Vaast region, Belgium, impacted by three decades of deformation post-coal mine closure. Using Persistent Scatterer Interferometric Synthetic Aperture Radar (PS-InSAR) applied to 30 years of Synthetic Aperture Radar (SAR) data along with geological investigations and 13 years of piezometric well data, we analysed subsurface dynamics leading to environmental hazards in the region. We focused on identifying key periods of significant deformation pattern changes. The soft Wealden terrains (Lower Cretaceous) are characterized by alternating sandstones, clay, and sand facies, composing the sedimentary roof of an old mine drainage adit dug at 30 m depth. The presence of this mined adit structure is contributing to the current vulnerability of the region. Especially, when the abandoned mine drainage adit was filled with water following the cessation of pumping. Due to an increase in the water level in the Wealden aquifer below the gallery, natural groundwater flow paths and pressures have increased over time. At least two significant mudflow outbursts, in 2009 and 2018, occurred. This study shows that both events were correlated with changes in water level and deformation. Moreover, results suggest a new phase of rising water levels and ground uplift due to increased pressure in the Wealden aquifer. A crucial outcome of this research is the assessment of the potential for another similar incident soon, informed by the correlation analysis of water level and ground displacement time series.
Located in
Library
/
RBINS Staff Publications 2024
-
The Urban Geo-climate Footprint approach: Enhancing urban resilience through improved geological conceptualisation
-
Urban resilience is critical to allow cities to withstand the challenges of the 21st Century. One factor that is often overlooked in such assessments is the role of the subsurface. A novel methodology called the Urban Geo-climate Footprint (UGF) has been developed to classify cities quickly and comprehensively from geological and climatic perspectives. The method operates on the fundamental assumption that cities with similar geologicalgeographical settings will face similar challenges, due to both common geological issues and associated climate impacts. The UGF approach has been applied to 41 European cities in collaboration with 17 Geological Surveys of Europe, the results of the UGF analysis are presented along with a regional classification of the geological resilience indicators. The UGF tool provides a semi-quantitative representation of the pressures driven by geological and climatic complexity for the cities presented, providing for a first time such classification of the urban environment. The advantage of this methodology lies in increasing awareness among non-experts and decision-makers of the interplay between geological settings, climate change pressures, and anthropogenic activities. Furthermore, it facilitates the exchange best practices among city planners to increase resilience, supporting knowledge based decision making to promote actions and policies, that enhance geoscience-informed climate justice.
Located in
Library
/
RBINS Staff Publications 2024