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In situ incubations with the Gothenburg benthic chamber landers: Applications and quality control
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In situ incubations of sediment with overlying water provide valuable and consistent information about benthic fluxes and processes at the sediment-water interface. In this paper, we describe our experiences and a variety of applications from the last 14 years and 308 deployments with the Gothenburg benthic chamber lander systems. We give examples of how we use sensor measurements for chamber leakage control, in situ chamber volume determination, control of syringe sampling times, sediment resuspension and stirring quality. We present examples of incubation data for in situ measurements of benthic fluxes of oxygen, dissolved inorganic carbon, nutrients, metals and gases made with our chamber landers, as well as manipulative injection experiments to study nitrogen cycling (injections of 15N nitrate), phosphate retention (injections of marl suspension) and targeted sediment resuspension. Our main goal is to demonstrate the possibilities that benthic chamber lander systems offer to measure solute fluxes and study processes at the sediment-water interface. Based on our experience, we recommend procedures to be used in order to obtain high quality data with benthic chamber landers.
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RBINS Staff Publications 2021
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Bioturbation has a limited effect on phosphorus burial in salt marsh sediments
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It has been hypothesized that the evolution of animals during the Ediacaran–Cambrian transition stimulated the burial of phosphorus in marine sediments. This assumption is centrally based on data compilations from marine sediments deposited under oxic and anoxic bottom waters. Since anoxia excludes the presence of infauna and sediment reworking, the observed differences in P burial are assumed to be driven by the presence of bioturbators. This reasoning however ignores the potentially confounding impact of bottom-water oxygenation on phosphorus burial. Here, our goal is to test the idea that bioturbation increases the burial of organic and inorganic phosphorus (Porg and Pinorg, respectively) while accounting for bottom-water oxygenation. We present solid-phase phosphorus speciation data from salt marsh ponds with and without bioturbation (Blakeney salt marsh, Norfolk, UK). In both cases, the pond sediments are exposed to oxygenated bottom waters, and so the only difference is the presence or absence of bioturbating macrofauna. Our data reveal that the rate of Porg and Pinorg burial are indistinguishable between bioturbated and non-bioturbated sediments. A large terrestrial fraction of organic matter and higher sedimentation velocity than generally found in marine sediments (0.3 +/- 0.1 cm yr-1) may partially impact these results. However, the absence of a clear effect of bioturbation on total P burial puts into question the presumed importance of bioturbation for phosphorus burial.
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RBINS Staff Publications 2021
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Deep-water inflow event increases sedimentary phosphorus release on a multi-year scale
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Phosphorus fertilisation (eutrophication) is expanding oxygen depletion in coastal systems worldwide. Under low-oxygen bottom water conditions, phosphorus release from the sediment is elevated, which further stimulates primary production. It is commonly assumed that reoxygenation could break this “vicious cycle” by increasing the sedimentary phosphorus retention. Recently, a deepwater inflow into the Baltic Sea created a natural in situ experiment that allowed us to investigate if temporary reoxygenation stimulates sedimentary retention of dissolved inorganic phosphorus (DIP). Surprisingly, during this 3-year study, we observed a transient but considerable increase, rather than a decrease, in the sediment efflux of DIP and other dissolved biogenic compounds. This suggested that the oxygenated inflow elevated the organic matter degradation in the sediment, likely due to an increase in organic matter supply to the deeper basins, potentially combined with a transient stimulation of the mineralisation efficiency. As a result, the net sedimentary DIP release per m2 was 56 %–112% higher over the years following the re-oxygenation than before. In contrast to previous assumptions, our results show that inflows of oxygenated water to anoxic bottom waters can increase the sedimentary phosphorus release.
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RBINS Staff Publications 2021
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Iron and sulfur cycling in the cGENIE.muffin Earth system model (v0.9.21)
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The coupled biogeochemical cycles of iron and sulfur are central to the long-term biogeochemical evolution of Earth’s oceans. For instance, before the development of a persistently oxygenated deep ocean, the ocean interior likely alternated between states buffered by reduced sulfur (“euxinic”) and buffered by reduced iron (“ferruginous”), with important implications for the cycles and hence bioavailability of dissolved iron (and phosphate). Even after atmospheric oxygen concentrations rose to modern-like values, the ocean episodically continued to develop regions of euxinic or ferruginous conditions, such as those associated with past key intervals of organic carbon deposition (e.g. during the Cretaceous)and extinction events (e.g. at the Permian–Triassic boundary). A better understanding of the cycling of iron and sulfur in an anoxic ocean, how geochemical patterns in the ocean relate to the available spatially heterogeneous geological observations, and quantification of the feedback strengths between nutrient cycling, biological productivity, and ocean redox requires a spatially resolved representation of ocean circulation together with an extended set of (bio)geochemical reactions. Here, we extend the “muffin” release of the intermediate complexity Earth system model cGENIE to now include an anoxic iron and sulfur cycle (expanding the existing oxic iron and sulfur cycles), enabling the model to simulate ferruginous and euxinic redox states as well as the precipitation of reduced iron and sulfur minerals (pyrite, siderite, greenalite) and attendant iron and sulfur isotope signatures, which we describe in full. Because tests against present-day (oxic) ocean iron cycling exercises only a small part of the new code, we use an idealized ocean configuration to explore model sensitivity across a selection of key parameters. We also present the spatial patterns of concentrations and d56Fe and d34S isotope signatures of both dissolved and solid-phase Fe and S species in an anoxic ocean as an example application. Our sensitivity analyses show that the first-order results of the model are relatively robust against the choice of kinetic parameter values within the Fe–S system and that simulated concentrations and reaction rates are comparable to those observed in process analogues for ancient oceans (i.e. anoxic lakes). Future model developments will address sedimentary recycling and benthic iron fluxes back to the water column, together with the coupling of nutrient (in particular phosphate) cycling to the iron cycle.
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RBINS Staff Publications 2021
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End-Permian marine extinction due to temperature-driven nutrient recycling and euxinia
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Extreme warming at the end-Permian induced profound changes in marine biogeochemical cycling and animal habitability, leading to the largest metazoan extinction in Earth’s history. However, a causal mechanism for the extinction that is consistent with various proxy records of geochemical conditions through the interval has yet to be determined. Here we combine an Earth system model with global and local redox interpretations from the Permian/Triassic in an attempt to identify this causal mechanism. Our results show that a temperature-driven increase in microbial respiration can reconcile reconstructions of the spatial distribution of euxinia and seafloor anoxia spanning the Permian–Triassic transition. We illustrate how enhanced metabolic rates would have strengthened upper-ocean nutrient (phosphate) recycling, and thus shoaled and intensified the oxygen minimum zones, eventually causing euxinic waters to expand onto continental shelves and poison benthic habitats. Taken together, our findings demonstrate the sensitive interconnections between temperature, microbial metabolism, ocean redox state and carbon cycling during the end-Permian mass extinction. As enhanced microbial activity in the ocean interior also lowers subsurface dissolved inorganic carbon isotopic values, the carbon release as inferred from isotope changes in shallow subsurface carbonates is likely overestimated, not only for this event, but perhaps for many other carbon cycle and climate perturbations through Earth’s history.
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RBINS Staff Publications 2021
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Subtidal Natural Hard Substrate Quantitative Habitat Mapping: Interlinking Underwater Acoustics and Optical Imagery with Machine Learning
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Subtidal natural hard substrates (SNHS) promote occupancy by rich benthic communities that provide irreplaceable and fundamental ecosystem functions, representing a global priority target for nature conservation and recognised in most European environmental legislation. However, scientifically validated methodologies for their quantitative spatial demarcation, including information on species occupancy and fine-scale environmental drivers (e.g., the effect of stone size on colonisation) are rare. This is, however, crucial information for sound ecological management. In this investigation, high-resolution (1 m) multibeam echosounder (MBES) depth and backscatter data and derivates, underwater imagery (UI) by video drop-frame, and grab sediment samples, all acquired within 32 km2 of seafloor in offshore Belgian waters, were integrated to produce a random forest (RF) spatial model, predicting the continuous distribution of the seafloor areal cover/m2 of the stones’ grain sizes promoting colonisation by sessile epilithic organisms. A semi-automated UI acquisition, processing, and analytical workflow was set up to quantitatively study the colonisation proportion of different grain sizes, identifying the colonisation potential to begin at stones with grain sizes Ø ≥ 2 cm. This parameter (i.e., % areal cover of stones Ø ≥ 2 cm/m2) was selected as the response variable for spatial predictive modelling. The model output is presented along with a protocol of error and uncertainty estimation. RF is confirmed as an accurate, versatile, and transferable mapping methodology, applicable to area-wide mapping of SNHS. UI is confirmed as an essential aid to acoustic seafloor classification, providing spatially representative numerical observations needed to carry out quantitative seafloor modelling of ecologically relevant parameters. This contribution sheds innovative insights into the ecologically relevant delineation of subtidal natural reef habitat, exploiting state-of-the-art underwater remote sensing and acoustic seafloor classification approaches.
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RBINS Staff Publications 2021
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The first lower jaw of a ctenacanthid shark from the Late Devonian (Famennian) of Belgium
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RBINS Staff Publications 2021
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The erroneous chondrichthyan egg case assignments from the Devonian: implications for the knowledge on the evolution of the reproductive strategy within chondrichthyans
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RBINS Staff Publications 2021
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First Detections of Culiseta longiareolata (Diptera: Culicidae) in Belgium and the Netherlands
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RBINS Staff Publications 2021
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Effects of elevational range shift on the morphology and physiology of a carabid beetle invading the sub-Antarctic Kerguelen Islands
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RBINS Staff Publications 2020
