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MORPHYLL: A database of fossil leaves and their morphological traits
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Morphometric characters of fossil leaves such as size and shape are important and widely used sources for reconstructing palaeoenvironments. Various tools, including CLAMP or Leaf Margin Analysis, utilize leaf traits as input parameters for estimating palaeoclimate, mostly based on correlations between traits and climate parameters of extant plants. During the last few years, the scope of information extracted from the morphology of fossil leaves has been further expanded by including leaf economics, which describe correlations between functional leaf traits and ecological strategies. The amount and quality of available data are essential for a successful palaeoecological analysis utilizing leaf traits. Here, the database MORPHYLL is described. This database is devised to offer a web-based resource for fossil leaf trait data. For this purpose, fossil leaves from various collections were digitized and morphometric traits extracted from leaf outlines. Besides metadata such as accession number, repository, fossil site or taxonomic information (for identified specimens), MORPHYLL offers queries for several morphometric parameters and derived ecophysiological traits (e.g., leaf mass per area). Currently, the database contains data from about 6000 fossil leaves from sites in Central Europe, spanning almost the entire Paleogene and part of the early Neogene. The application potential of the database is demonstrated by conducting some exemplary analyses of leaf traits for the Paleocene, Eocene and Oligocene, with the results indicating changes of mean leaf traits through time. For example, the results show leaf mass per area to peak during the Eocene, which is in accordance with general climate development during the Paleogene.
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RBINS Staff Publications 2018
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A subjective global checklist (submitted)of the Recent non-marine Ostracoda (Crustacea).
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We present an updated, subjective list of the extant, non-marine ostracod genera and species of the world, with their distributions in the major zoogeographical regions, as well as a list of the genera in their present hierarchical taxonomic positions. The list includes all taxa described and taxonomic alterations made up to 1 July 2018. Taxonomic changes include 17 new combinations, 5 new names, 1 emended specific name and 11 new synonymies (1 tribe, 4 genera, 6 species). Taking into account the recognized synonymies, there are presently 2330 subjective species of non-marine ostracods in 270 genera. The most diverse family in non-marine habitats is the Cyprididae, comprising 43.2% of all species, followed by the Candonidae (29.0%), Entocytheridae (9.1%) and the Limnocytheridae (7.0%). An additional 13 families comprise the remaining 11.8% of described species. The Palaearctic zoogeographical region has the greatest number of described species (799), followed by the Afrotropical region with 453 species and the Nearctic region with 439 species. The Australasian and Neotropical regions each have 328 and 333 recorded species, respectively, while the Oriental region has 271. The vast majority of non-marine ostracods (89.8%) are endemic to one zoogeographical region, while only six species are found in six or more regions. We also present an additional list with ‘uncertain species’, which have neither been redescribed nor re-assessed since 1912, and which are excluded from the main list; a list of taxonomic changes presented in the present paper; a table with the number of species and % per family; and a table with numbers of new species described in the 20-year period between 1998 and 2017 per zoogeographical region. Two figures visualize the total number of species and endemic species per zoogeographical region, and the numbers of new species descriptions per decade for all families and the three largest families since 1770, respectively.
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RBINS Staff Publications 2019
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Four new genera and five new species of “Heterocypris” from Western Australia (Crustacea, Ostracoda, Cyprinotinae).
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Five new species in four new genera from Western Australia are described. All species have valve characters that are reminiscent of the genus Heterocypris Claus, 1892 and also have similar valve outlines, with highly arched valves. However, all species have a hemipenis morphology that is totally different from the typical form in Heterocypris. In Patcypris gen. nov. (with type species P. outback gen. et sp. nov.), the lateral lobe is large and shaped as a pickaxe, while the medial lobe is divided into two distal lobes. Trilocypris gen. nov. (with type species T. horwitzi gen. et sp. nov.) is characterised by a hemipenis that has three, instead of two, distal lobes. In Bilocypris gen. nov. (with type species B. fortescuensis gen. et sp. nov. and a second species, B. mandoraensis gen. et sp. nov.), the lateral lobe of the hemipenis is spatulate, rather than boot-shaped, and the medial lobe is bilobed. Billcypris gen. nov. (with type species B. davisae gen. et sp. nov.) has a large and sub-rectangular lateral lobe and a pointed medial lobe. We discuss the taxonomic value of the traditional and new morphological characters and speculate that the diversity of this cluster of genera and species may be greater than currently known.
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RBINS Staff Publications 2019
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Report on the faunal remains from trench K (Roman Pessinus, Central Anatolia)
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Unusual pectoral apparatus in a predatory dinosaur resolves avian wishbone homology
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RBINS Staff Publications 2021
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Phylogenetic analysis of the Baikalodrilus species flock (Annelida: Clitellata: Naididae), an endemic genus to Lake Baikal (Russia)
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Lake Baikal is populated by an endemic genus of oligochaetes (Baikalodrilus), which currently comprises 24 morphospecies. The genus can be considered as a ‘species flock’. However, the validity of many species is questionable: the great similarity in their description and the lack of unequivocal diagnostic characters often lead species identification to an impasse. In order to clarify the systematics of this genus, we analysed two nuclear and two mitochondrial DNA markers of 40 Baikalodrilus specimens. DNA and morphological approaches are mostly congruent in suggesting ten candidate species, although two additional species are suspected. A reassessment of the taxonomic value of the morphological characteristics of Baikalodrilus suggests that there are few that can be used as distinctive, specific criteria in the genus. The association between candidate and nominal species remains problematic, except for three species identified prior to molecular analyses. Baikalodrilus trituberculum sp. nov. is described. Phylogenetic inferences suggests that the earliest split in Baikalodrilus and the time of divergence of most lineages corresponding to species are consistent with the hypothesis of a general rearrangement of the Baikal fauna, following major environmental changes due to a general cooling in the Early Pleistocene.
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RBINS Staff Publications 2019
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A review of the geology and origin of CO2 in mineral water springs in east Belgium
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Naturally CO2-rich mineral water springs (pouhons) in east Belgium occur in the context of the Rhenohercynian domain of the Variscan fold-and-thrust belt, mostly within the Cambro-Ordovician Stavelot-Venn Massif. The origin of the CO2 is still unclear, although different hypotheses exist. In this review study, we show pouhon waters are of the calcium bicarbonate type (~310 mg/l HCO3- on average), with notable Fe (~15 mg/l) and some Ca (~43 mg/l). Pouhon waters are primarily meteoric waters, as evidenced by H and O isotopic signature. The δ13Cof CO2 varies from -7.8 to +0.8‰ and contains up to ~15% He from magmatic origin, reflecting a combination of carbonate rocks and mantle as CO2 sources at depth. Dinantian and Middle Devonian carbonates at 2–6 km depth could be potential sources, with CO2 generated by dissolution. However, carbonates below the Stavelot-Venn Massif are only predicted by structural models that assume in-sequence thrusting, not by the more generally accepted out-of-sequence thrust models. The mantle CO2 might originate from degassing of the Eifel magmatic plume or an unknown shallower magmatic reservoir. Deep rooted faults are thought to act as preferential pathways. Overall low temperatures of pouhons (~10 °C) and short estimatedresidence times (up to 60 years) suggest magmatic CO2 is transported upwards to meet infiltrating groundwater at shallower depths, with partial to full isotopic exchange with carbonate rocks along its path, resulting in mixed magmatic-carbonate signature. Although the precise role and interaction of the involved subsurface processes remains debatable, this review study provides a baseline for future investigations.
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RBINS Staff Publications 2020
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A new Four-clawed Gecko from limestone hills in Lopburi Province, central Thailand (Squamata, Gekkonidae: Gehyra)
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We describe Gehyra wongchan sp. nov. from Tham Khao Chan (Khao Chan Cave), Tha Luang District, and Wat Khao Wong, Kok Samrong District, in Lopburi Province, central Thailand. The new species differs from all currently recognized Gehyra by the following combination of morphological characters and dorsal color pattern: maximal known snout–vent length of 52.4 mm, 8–10 supralabials, 76–80 dorsal and 48–50 ventral scale rows around midbody, absence of skin folds on limbs, 17 or 18 preanofemoral pores in males in a continuous series extending to mid-length of femur (pores absent in females), tail not- to moderately widened behind vent in adults, a single row of widened subcaudals, digits and toes unwebbed, 7 or 8 divided subdigital lamellae on 4th toe, and a dorsal pattern with white spots as large or larger than adjacent crescentic black markings on a beige to light-brown background.
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RBINS Staff Publications 2022
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Vertebrate predation in the Late Devonian evidenced by bite traces and regurgitations: implications for an early tetrapod freshwater ecosystem
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The terrestrialization process by vertebrates occurred during the Devonian period, with fully land-dwelling tetrapods recorded in the Carboniferous. Thus, the Late Devonian is an important period for deciphering the ecological pressures that applied during the water-to-land transition. Higher predation pressures in the underwater environment have been suggested as an influential biotic evolutionary factor in this key habitat shift. Direct evidence of ancient predation on Palaeozoic vertebrates is seen in the form of rare traces preserved on fossils, and these range from trauma observed on the skeleton (such as attack marks) to ingested food remains (bromalites). The late Famennian freshwater ecosystem of Strud (Belgium) consists of a rich assemblage of many coeval gnathostomes or jawed fishes (placoderms, ‘acanthodians’, actinopterygians, and various sarcopterygian groups including tetrapods). Here we analyse the record of direct evidence for predation in the Strud vertebrate fossil assemblage. We recognize 12 regurgitalites and 13 bite traces, including a rare case of a tooth embedded in its original prey body target. Fossils from regurgitalites were imaged using scanning electron microscopy and chemically analysed to test for their possible ingestion signature by comparison with other isolated skeletal remains from the same locality. From this evidence, tristichopterid tetrapodomorphs are inferred to be the highest consumers of the trophic network, targeting small placoderms, and porolepiforms, and probably congeners. We observe two possible prey patterns in regurgitalites, for sarcopterygians and actinopterygians, both of which are associated with acanthodians. In Strud, no trophic position can be deduced for tetrapods from direct fossil evidence of predation.
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RBINS Staff Publications 2022
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Opportunistic feeding habits of two African freshwater clupeid fishes: DNA metabarcoding unravels spatial differences in diet and microbiome, and identifies new prey taxa
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The African Lake Tanganyika clupeids play an important role in the lake's ecosystem and have a high regional economic and nutritional value. Using DNA metabarcoding, we analysed the prey item composition and microbiome of these two clupeid species, Stolothrissa tanganicae and Limnothrissa miodon. We sequenced the mitochondrial COI region of the gut content for prey analysis and the 16S rRNA region of the hindgut content for microbiome analysis of 140 fish sampled at five locations across Lake Tanganyika. Our research confirmed previously reported prey items and discovered prey items that were not reported before, including the jellyfish Limnocnida tanganjicae. The hindgut of the fish harboured 15 bacterial phyla, with the most common being Firmicutes and Proteobacteria. The two clupeid species differed in diet, but not in microbiome. Further, the diet of S. tanganicae, but not its microbiome, varied on a spatial scale, whereas the microbiome, but not the diet, of L. miodon showed spatial variation. Our findings suggest that the Lake Tanganyika clupeids are opportunists, with a diet reflecting the local zooplankton community's composition. These results can serve as a useful reference for monitoring the health status of economically important fish stocks.
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RBINS Staff Publications 2023
