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Pleistocene Mitochondrial Genomes Suggest a Single Major Dispersal of Non-Africans and a Late Glacial Population Turnover in Europe
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How modern humans dispersed into Eurasia and Australasia, including the number of separate expansions and their timings, is highly debated [ 1, 2 ]. Two categories of models are proposed for the dispersal of non-Africans: (1) single dispersal, i.e., a single major diffusion of modern humans across Eurasia and Australasia [ 3–5 ]; and (2) multiple dispersal, i.e., additional earlier population expansions that may have contributed to the genetic diversity of some present-day humans outside of Africa [ 6–9 ]. Many variants of these models focus largely on Asia and Australasia, neglecting human dispersal into Europe, thus explaining only a subset of the entire colonization process outside of Africa [ 3–5, 8, 9 ]. The genetic diversity of the first modern humans who spread into Europe during the Late Pleistocene and the impact of subsequent climatic events on their demography are largely unknown. Here we analyze 55 complete human mitochondrial genomes (mtDNAs) of hunter-gatherers spanning ∼35,000 years of European prehistory. We unexpectedly find mtDNA lineage M in individuals prior to the Last Glacial Maximum (LGM). This lineage is absent in contemporary Europeans, although it is found at high frequency in modern Asians, Australasians, and Native Americans. Dating the most recent common ancestor of each of the modern non-African mtDNA clades reveals their single, late, and rapid dispersal less than 55,000 years ago. Demographic modeling not only indicates an LGM genetic bottleneck, but also provides surprising evidence of a major population turnover in Europe around 14,500 years ago during the Late Glacial, a period of climatic instability at the end of the Pleistocene.
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RBINS Staff Publications 2016
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New carnivoraforms from the Latest Paleocene of Europe and their bearing on the origin and radiation of Carnivoraformes (Carnivoramorpha, Mammalia)
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We report the discovery of the earliest European carnivoraforms, based on two new taxa from the latest Paleocene of France and Romania. A new species of Vassacyon, V. prieuri, from the locality of Rivecourt (MP6b; Oise, France) (MP D Mammalian Paleogene reference levels) is described based on a dentary fragment and isolated teeth. This species displays several primitive features compared with species of Vassacyon known from the early Eocene of North America and Europe. A second Paleocene carnivoraform, cf. Gracilocyon sp., is described based on fragmentary specimens from the locality of Jibou (MP6b; Transylvania, Romania). Carnivoraformes were previously unknown in Europe before the Eocene, and Vassacyon prieuri and cf. Gracilocyon sp. are their oldest records in Europe. These discoveries favor the hypothesis of a dispersal of these two genera from Europe to North America during the Paleocene-Eocene Thermal Maximum. Vassacyon prieuri and cf. Gracilocyon sp. strengthen support for the level MP6b and its correlation with the Clarkforkian. The geographic origin of the Carnivoraformes remains unknown. However, based on the observed biochronological and geographic distributions of the carnivoraforms, we infer a possible Asian origin for this group. In this scenario, Gracilocyon and Vassacyon dispersed to Europe during the Clarkforkian MP6b time, probably together with rodent taxa, whereas Uintacyon dispersed from Asia to North America shortly after rodents and tillodonts
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RBINS Staff Publications 2016
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First insights into the diversity of gill monogeneans of ‘Gnathochromis’ and Limnochromis (Teleostei, Cichlidae) in Burundi: do the parasites mirror host ecology and phylogenetic history?
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Monogenea is one of the most species-rich groups of parasitic flatworms worldwide, with many species described only recently, which is particularly true for African monogeneans. For example, Cichlidogyrus, a genus mostly occurring on African cichlids, comprises more than 100 nominal species. Twenty-two of these have been described from Lake Tanganyika, a famous biodiversity hotspot in which many vertebrate and invertebrate taxa, including monogeneans, underwent unique and spectacular radiations. Given their often high degrees of host specificity, parasitic monogeneans were also used as a potential tool to uncover host species relationships. This study presents the first investigation of the monogenean fauna occurring on the gills of endemic ‘Gnathochromis’ species along the Burundese coastline of Lake Tanganyika. We test whether their monogenean fauna reflects the different phylogenetic position and ecological niche of ‘Gnathochromis’ pfefferi and Gnathochromis permaxillaris. Worms collected from specimens of Limnochromis auritus, a cichlid belonging to the same cichlid tribe as G. permaxillaris, were used for comparison. Morphological as well as genetic characterisation was used for parasite identification. In total, all 73 Cichlidogyrus individuals collected from ‘G.’ pfefferi were identified as C. irenae. This is the only representative of Cichlidogyrus previously described from ‘G.’ pfefferi, its type host. Gnathochromis permaxillaris is infected by a species of Cichlidogyrus morphologically very similar to C. gillardinae. The monogenean species collected from L. auritus is considered as new for science, but sample size was insufficient for a formal description. Our results confirm previous suggestions that ‘G.’ pfefferi as a good disperser is infected by a single monogenean species across the entire Lake Tanganyika. Although G. permaxillaris and L. auritus are placed in the same tribe, Cichlidogyrus sp. occurring on G. permaxillaris is morphologically more similar to C. irenae from ‘G.’ pfefferi, than to the Cichlidogyrus species found on L. auritus. Various evolutionary processes, such as host-switching or duplication events, might underlie the pattern observed in this particular parasite-host system. Additional samples for the Cichlidogyrus species occuring on G. permaxillaris and L. auritus are needed to unravel their evolutionary history by means of (co-)phylogenetic analyses.
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RBINS Staff Publications 2016
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Transcription, signaling receptor activity, oxidative phosphorylation and fatty acid metabolism mediate the presence of closely-related cryptic species in distinct intertidal and cold-seep habitats
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Taxonomic challenges in freshwater fishes: a mismatch between morphology and DNA barcoding in fish of the north-eastern part of the Congo basin
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This study evaluates the utility of DNA barcoding to traditional morphology-based species identifications for the fish fauna of the north-eastern Congo basin. We compared DNA sequences (COI) of 821 samples from 206 morphologically identified species. Best match, best close match and all species barcoding analyses resulted in a rather low identification success of 87.5%, 84.5% and 64.1%, respectively. The ratio ‘nearest-neighbour distance/maximum intraspecific divergence’ was lower than 1 for 26.1% of the samples, indicating possible taxonomic problems. In ten genera, belonging to six families, the number of species inferred from mtDNA data exceeded the number of species identified using morphological features; and in four cases indications of possible synonymy were detected. Finally, the DNA barcodes confirmed previously known identification problems within certain genera of the Clariidae, Cyprinidae and Mormyridae. Our results underscore the large number of taxonomic problems lingering in the taxonomy of the fish fauna of the Congo basin and illustrate why DNA barcodes will contribute to future efforts to compile a reliable taxonomic inventory of the Congo basin fish fauna. Therefore, the obtained barcodes were deposited in the reference barcode library of the Barcode of Life Initiative.
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Comparative phylogeographies of six species of hinged terrapins (Pelusios spp.) reveal discordant patterns and unexpected differentiation in the P. castaneus/P. chapini complex and P. rhodesianus
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Towards a revision of the Neotropical soldierless termites (Isoptera: Termitidae): redescription of the genus <i>Grigiotermes</i> Mathews and description of five new genera
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RBINS Staff Publications 2016
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Habitat association and coexistence of endemic and introduced ant species in Galapagos Islands
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1. We investigated ant communities in all main vegetation zones of the model island of Santa Cruz in the Galápagos archipelago (155 collection points, spread over 21 sites; 28 ant species collected), and evaluated the distribution, coexistence, and effect of environmental factors in a community composed of endemic, probably endemic, and introduced ants of the New World and exotic origin. 2. Introduced species were the most frequent, occurring in 98% of the samples, yet endemic and probably endemic species still occurred in 54% of the samples, and constituted one of three most common species. The present study revealed that the habitat type along with altitude and the tree cover are the primary factors shaping ant community composition. Little evidence was found for a competitively structured assemblage of ant species. 3. The present study confirmed the predominance of two dominant invasive species, Solenopsis geminata Fabricius and Wasmannia auropunctata Roger, whose abundances are negatively correlated. The abundance of S. geminata is positively correlated with the overall species richness, and with the proportion of other introduced species. The presence of both invasive ants is associated with a low evenness of ant communities. 4. The present study (i) stresses the dominance of introduced species and the relative resistance of endemic species, (ii) highlights the on-going processes of species introductions and (iii) points out the need for adequate monitoring and conservation of the pristine and threatened environments that constitute the Galápagos Islands.
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Environment and subsistence in north-western Europe during the Younger Dryas: An isotopic study of the human of Rhünda (Germany)
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Les pierres décoratives en cité des Tongres : mise en œuvre et recyclage.
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RBINS Staff Publications 2016
