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A comparison of two hypotheses of the domestication of the dog
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Adaptation of a polyphagous herbivore to a novel host plant extensively shapes the transcriptome of herbivore and host
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Generalist arthropod herbivores rapidly adapt to a broad range of host plants. However, the extent of transcriptional reprogramming in the herbivore and its hosts associated with adaptation remains poorly understood. Using the spider mite Tetranychus urticae and tomato as models with available genomic resources, we investigated the reciprocal genomewide transcriptional changes in both spider mite and tomato as a consequence of mite's adaptation to tomato. We transferred a genetically diverse mite population from bean to tomato where triplicated populations were allowed to propagate for 30 generations. Evolving populations greatly increased their reproductive performance on tomato relative to their progenitors when reared under identical conditions, indicative of genetic adaptation. Analysis of transcriptional changes associated with mite adaptation to tomato revealed two main components. First, adaptation resulted in a set of mite genes that were constitutively downregulated, independently of the host. These genes were mostly of an unknown function. Second, adapted mites mounted an altered transcriptional response that had greater amplitude of changes when re-exposed to tomato, relative to nonadapted mites. This gene set was enriched in genes encoding detoxifying enzymes and xenobiotic transporters. Besides the direct effects on mite gene expression, adaptation also indirectly affected the tomato transcriptional responses, which were attenuated upon feeding of adapted mites, relative to the induced responses by nonadapted mite feeding. Thus, constitutive downregulation and increased transcriptional plasticity of genes in a herbivore may play a central role in adaptation to host plants, leading to both a higher detoxification potential and reduced production of plant defence compounds.
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Selection for costly traits result in a vacant mating niche and in the evolution of a genetic male dimorphism
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The expected strong directional selection for traits that increase a male’s mating ability conflicts with the frequent observation that within species, males may show extreme variation in sexual traits. These male reproductive polymorphisms are usually attributed to direct male–male competition. It is currently unclear, however, how directional selection for sexually selected traits may convert into disruptive selection, and if female preference for elaborate traits may be an alternative mechanism driving the evolution of male polymorphism. Here, we explore this mechanism using the polyandric dwarf spider Oedothorax gibbosus as a model. We first show that males characterized by conspicuous cephalic structures serving as a nuptial feeding device (“gibbosus males”) significantly outperform other males in siring offspring of previously fertilized females. However, significant costs in terms of development time of gibbosus males open a mating niche for an alternative male type lacking expensive secondary sexual traits. These “tuberosus males” obtain virtually all fertilizations early in the breeding season. Individual-based simulations demonstrate a hitherto unknown general principle, by which males selected for high investment to attract females suffer constrained mating opportunities. This creates a vacant mating
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Evolutionary history of a dispersal-associated locus across sympatric and allopatric divergent populations of a wing-polymorphic beetle across Atlantic Europe
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Studying the evolutionary history of trait divergence, in particular those related to dispersal capacity, is of major interest for the process of local adaptation and metapopulation dynamics. Here, we reconstruct the evolution of different alleles at the nuclear-encoded mitochondrial NADP+-dependent isocitrate dehydrogenase (mtIdh) locus of the ground beetle Pogonus chalceus that are differentially and repeatedly selected in short- and long-winged populations in response to different hydrological regimes at both allopatric and sympatric scales along the Atlantic European coasts. We sequenced 2788 bp of the mtIdh locus spanning a ~7-kb genome region and compared its variation with that of two supposedly neutral genes. mtIdh sequences show (i) monophyletic clustering of the short-winged associated mtIDH-DE haplotypes within the long-winged associated mtIDH-AB haplotypes, (ii) a more than tenfold lower haplotype diversity associated with the mtIDH-DE alleles compared to the mtIDH-AB alleles and (iii) a high number of fixed nucleotide differences between both mtIDH haplotype clusters. Coalescent simulations suggest that this observed sequence variation in the mtIdh locus is most consistent with a singular origin in a partially isolated subpopulation, followed by a relatively recent spread of the mtIDHDE allele in short-winged populations along the Atlantic coast. These results demonstrate that even traits associated with decreased dispersal capacity can rapidly spread and that reuse of adaptive alleles plays an important
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Endosymbiont dominated bacterial communities in a dwarf spider
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The microbial community of spiders is little known, with previous studies focussing primarily on the medical importance of spiders as vectors of pathogenic bacteria and on the screening of known cytoplasmic endosymbiont bacteria. These screening studies have been performed by means of specific primers that only amplify a selective set of endosymbionts, hampering the detection of unreported species in spiders. In order to have a more complete overview of the bacterial species that can be present in spiders, we applied a combination of a cloning assay, DGGE profiling and high-throughput sequencing on multiple individuals of the dwarf spider Oedothorax gibbosus. This revealed a co-infection of at least three known (Wolbachia, Rickettsia and Cardinium) and the detection of a previously unreported endosymbiont bacterium (Rhabdochlamydia) in spiders. 16S rRNA gene sequences of Rhabdochlamydia matched closely with those of Candidatus R. porcellionis, which is currently only reported as a pathogen from a woodlouse and with Candidatus R. crassificans reported from a cockroach. Remarkably, this bacterium appears to present in very high proportions in one of the two populations only, with all investigated females being infected. We also recovered Acinetobacter in high abundance in one individual. In total, more than 99% of approximately 4.5M high-throughput sequencing reads were restricted to these five bacterial species. In contrast to previously reported screening studies of terrestrial arthropods, our results suggest that the bacterial communities in this spider species are dominated by, or even restricted to endosymbiont bacteria. Given the high prevalence of endosymbiont species in spiders, this bacterial community pattern could be widespread in the Araneae order.
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Craniodental and postcranial morphology of Indohyaenodon raoi from the Early Eocene of India, and its implications for ecology, phylogeny, and biogeography of hyaenodontid mammals
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New remains of the early Eocene hyaenodontid Indohyaenodon raoi are described from the Vastan Lignite Mine in Gujarat, western India, including the first known rostrum, upper dentition, and postcrania, substantially expanding our knowledge of the species and providing insights into its functional morphology and relationships. Craniodental morphology suggests that I. raoi had a broad diet, including non-vertebrate material as well as flesh of a diversity of prey species. Postcranial morphology is broadly similar to that of other early hyaenodontids and suggests a scansorial locomotor repertoire. Dental morphology indicates that I. raoi is closely related to other South Asian hyaenodontids, with shared features including strong cingula, narrow premolars, and a reduced P4 protocone. We present the most comprehensive phylogenetic analysis of Hyaenodontidae to date, which corroborates this relationship but finds South Asian hyaenodontids to be the stem of a group that includes most African hyaenodontids. This and other higher-level relationships within Hyaenodontidae are, however, weakly supported, and substantially different alternative hypotheses of relationships are not significantly less parsimonious, reflecting strong character conflict. Factors contributing to this conflict include the isolation of hyaenodontid faunas on different continents during much of the Eocene, canalization and simplification of carnivorous dentitions, and a lack of non-dental material for critical hyaenodontid groups. The new phylogeny is consistent with either an African or an Asian origin for the group.
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Red Iron-Pigmented Tooth Enamel in a Multituberculate Mammal from the Late Cretaceous Transylvanian “Haţeg Island”
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Mammals that inhabit islands are characterized by peculiar morphologies in comparison to their mainland relatives. Here we report the discovery of a partial skull associated with the lower jaws of a Late Cretaceous (~70 Ma) multituberculate mammal from the Carpathian “Haţeg Island” of Transylvania, Romania. The mammal belongs to the Kogaionidae, one of the rare families that survived the Cretaceous—Paleogene mass extinction in Europe. The excellent preservation of this specimen allows for the first time description of the complete dentition of a kogaionid and demonstration that the enigmatic Barbatodon transylvanicus presents a mosaic of primitive and derived characters, and that it is phylogenetically basal among the Cimolodonta. Another peculiarity is the presence of red pigmentation in its tooth enamel. The red coloration is present on the anterior side of the incisors and on the cusps of most of the teeth. Energy-dispersive X-ray spectrometry (EDS) analysis reveals that the pigmented enamel contains iron, as in living placentals. Such a red pigmentation is known in living soricine shrews and many families of rodents, where it is thought to increase the resistance of the enamel to the abrasion that occurs during “grinding” mastication. The extended pattern of red pigment distribution in Barbatodon is more similar to that in eulipotyplan insectivores than to that in rodents and suggests a very hard diet and, importantly, demonstrates that its grasping incisors were not ever-growing. As inferred for other endemic Transylvanian vertebrates such as dwarf herbivorous dinosaurs and unusual theropod dinosaurs, insularity was probably the main factor of survival of such a primitive mammalian lineage relative to other mainland contemporaries of the Northern hemisphere.
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Early and Middle Holocene human occupation of the Egyptian Eastern Desert: Sodmein Cave
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In this paper, we discuss human occupation during the Early and Middle Holocene in the Eastern Desert of Egypt, based mainly on the data provided by excavated deposits from the Sodmein Cave, which produced an important Holocene stratigraphic sequence. This sequence is dated by a large number of conventional and AMS 14C dates. It appears that the area was empty of human occupation during the Late Glacial Maximum (LGM) and the earliest Holocene. With improved climatic conditions, humans arrived in the area, as hunter-gatherers using no ceramics, from around 7.1 to 6.4 Ka cal BC. Humans were absent from the cave during the Holocene 8.2 Ka event (ca. 6.3 Ka cal BC). From 6.2 to 5.0 Ka cal BC, herders visited the site on a regular basis importing caprines. The bone evidence for domesticated small stock is very limited at Sodmein but is nevertheless extremely important, as it contains the oldest known specimens for Africa to date. After 5.0 Ka cal BC, the area was almost entirely deserted.
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New diverse Early Eocene snake assemblage from Tadkeschwar Lignite Mine, Western India
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A diverse snake fauna has been described from the early Eocene Cambay Formation of the Vastan lignite mine, Gujarat, western India, among which early colubroid caenophidians were the most remarkable. Here we describe a new snake assemblage from the approximately contemporary nearby Tadkeshwar mine situated about 10 km southwest of Vastan. As at Vastan, the material from Tadkeshwar is represented only by vertebrae. There are several species in common with Vastan, such as the small madtsoiid gen. et sp. indet. that possesses a haemal keel, the co-occurring palaeophiids Palaeophis sp. and Pterosphenus sp., the same indeterminate boid, and Thaumastophis missiaeni (Caenophidia incertae sedis). However, the most abundant snakes in Tadkeshwar are the madtsoiids. Among them is a new giant madtsoiid that exhibits morphology broadly similar to Gigantophis and Madtsoia. However, it differs in having dorso-ventrally compressed vertebrae with oval cotyles and condyles and a strong notch on the posterior part of the neural arch. The major axis of the prezygapophysis is transverse in dorsal aspect and the parapophysis is very developed and extends beyond the lateral extremity of the prezygapophysis. The haemal keel is absent. While the composition of the Tadkeshwar fauna, like that from Vastan, is reminiscent of the early Eocene of Europe, the large madtsoiid suggests a Gondwanan paleogeographic origin. Indeed, such large madtsoiids are known only from the Late Cretaceous and Paleogene of South America, Africa and the Indian subcontinent, and the late Paleogene and Neogene of Australia. More importantly, the snake assemblage from Tadkeshwar indicates that Laurasian taxa of European affinities were still mixed with relict taxa from Gondwana during the early Eocene before or near the India-Asia collision. Grant Information National Geographic Society, Leakey Foundation, Wadia Institute of Himalayan Geology, Belgian Science Policy Office
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An exceptionally well preserved primate petrosal from the Early Eocene of India
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The Early Eocene (~54.5 Ma) Cambay Shale Formation at Vastan lignite mine (Gujarat, India) has yielded remains of both adapoid and omomyoid primates. The collection of primates includes not only jaws and teeth, but numerous exquisitely preserved postcranial elements. We report on the first cranial specimen for a primate from these deposits: an isolated left petrosal that preserves a partial stapes in anatomical position. The petrosal is identified as a primate based on the remnants of a petrosal bulla, and the presence of an ossified tube for the stapedial artery. The specimen documents a posterolateral entry of the internal carotid artery to the middle ear and a lateral course for the promontorial artery across the promontorium, characters most consistent with an attribution to Adapoidea. Of the adapoids published from the Vastan mine, body mass estimates based on the radii of the semicircular canals, calculated from high resolution microCT data, are most in line with previously calculated estimates for Marcgodinotius indicus, so the specimen is provisionally attributed to that species. Preserved anatomy is largely consistent with that described for Cantius. In particular, although the stapedial artery passed through a bony tube, the promontorial artery ran in an open groove from its origin off the internal carotid artery. This contrasts with the condition in omomyoids and most other adapoids, in which the promontorial artery was carried in a bony tube. The identification of an open groove for this artery in Cantius has been somewhat controversial, based on the state of preservation of published specimens. The petrosal from Vastan is extremely well preserved, demonstrating a clear opening in the internal carotid artery bony tube for the exit of the promontorial artery, and a well-demarcated groove on the promontorium for the latter artery that was clearly not enclosed. The absence of a bony tube for the promontorial artery in the oldest known adapoids suggests that the tube arose independently, in parallel, in Omomyoidea and Adapoidea. The promontorial artery is always enclosed in modern haplorhines, but when this artery is retained in living strepsirrhines it is often not fully enclosed by bone. Therefore, the primitive adapoid condition is more similar to that observed in Strepsirrhini. The antiquity and fine quality of preservation of this specimen make it relevant to reconstructing auditory morphology near the base of the primate tree. Grant Information Supported by an NSERC Discovery Grant to MTS and grants from the National Geographic Society and the Leakey Foundation to KDR.
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