Analyses of rock samples collected during recent fieldwork in the Ombilin Basin of west-central Sumatra, Indonesia yielded pollen data that constrain the age and depositional setting of associated plant macrofossil and vertebrate fossil-bearing units in the Sangkarewang and Sawahlunto formations. Articulated fish and plant fossils were recovered from bedding plane surfaces of fissile, laminated shales in the Sangkarewang Formation that are interpreted to have been deposited in an actively-subsiding, deep, anoxic lake. The overlying Talawi Member of the Sawahlunto Formation records stratigraphy consistent with deposition in a segue to marginal lacustrine marsh and poorly-drained paleosol settings. Interbedded carbonate mudstone / wackestone and lignitic claystone units in the basal Talawi Member preserve scattered, disarticulated fossils of fish, reptiles, an amphibian, and one mammal tooth. These beds grade into a heterolithic succession of fine-grained clastic rock, with coal interbeds likely deposited in a coastal alluvial setting. Marine influences in this interval are indicated by the nature of physical sedimentary structures in several zones, the presence of trace fossils such as Diplocraterion, Cylindrichnus and Teichichnus, and the occurrence of foraminiferal linings, dinocysts and other palynomorphs indicative of mangrove and back-mangrove settings. Palynological analysis indicates that the most probable age of the Sawahlunto Formation ranges from the middle to late Eocene, with a possible extension from the middle Eocene to the early Oligocene.
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RBINS Staff Publications 2025 OA
To date, only one mitogenome from an Antarctic amphipod has been published. Here, novel complete mitochondrial genomes (mitogenomes) of two morphospecies are assembled, namely, Charcotia amundseni and Eusirus giganteus. For the latter species, we have assembled two mitogenomes from different genetic clades of this species. The lengths of Eusirus and Charcotia mitogenomes range from 15,534 to 15,619 base pairs and their mitogenomes are composed of 13 protein coding genes, 22 transfer RNAs, 2 ribosomal RNAs, and 1 putative control region CR. Some tRNAs display aberrant structures suggesting that minimalization is also ongoing in amphipod mitogenomes. The novel mitogenomes of the two Antarctic species have features distinguishing them from other amphipod mitogenomes such as a lower AT-richness in the whole mitogenomes and a negative GC- skew in both strands of protein coding genes. The genetically most variable mitochondrial regions of amphipods are nad6 and atp8, while cox1 shows low nucleotide diversity among closely and more distantly related species. In comparison to the pancrustacean mitochondrial ground pattern, E. giganteus shows a translocation of the nad1 gene, while cytb and nad6 genes are translocated in C. amundseni. Phylogenetic analysis based on mitogenomes illustrates that Eusirus and Charcotia cluster together with other species belonging to the same amphipod superfamilies. In the absence of reference nuclear genomes, mitogenomes can be useful to develop markers for studying population genetics or evolutionary relationships at higher taxonomic levels.
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RBINS Staff Publications 2022
