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Article Reference BIRDIE: A data pipeline to inform wetland and waterbird conservation at multiple scales
Introduction: Efforts to collect ecological data have intensified over the last decade. This is especially true for freshwater habitats, which are among the most impacted by human activity and yet lagging behind in terms of data availability. Now, to support conservation programmes and management decisions, these data need to be analyzed and interpreted; a process that can be complex and time consuming. The South African Biodiversity Data Pipeline for Wetlands and Waterbirds (BIRDIE) aims to help fast and efficient information uptake, bridging the gap between raw ecological datasets and the information final users need. <br /><br /> Methods: BIRDIE is a full data pipeline that takes up raw data, and estimates indicators related to waterbird populations, while keeping track of their associated uncertainty. At present, we focus on the assessment of species abundance and distribution in South Africa using two citizen-science bird monitoring datasets, namely: the African Bird Atlas Project and the Coordinated Waterbird Counts. These data are analyzed with occupancy and state-space models, respectively. In addition, a suite of environmental layers help contextualize waterbird population indicators, and link these to the ecological condition of the supporting wetlands. Both data and estimated indicators are accessible to end users through an online portal and web services. <br /><br /> Results and discussion: We have designed a modular system that includes tasks, such as: data cleaning, statistical analysis, diagnostics, and computation of indicators. Envisioned users of BIRDIE include government officials, conservation managers, researchers and the general public, all of whom have been engaged throughout the project. Acknowledging that conservation programmes run at multiple spatial and temporal scales, we have developed a granular framework in which indicators are estimated at small scales, and then these are aggregated to compute similar indicators at broader scales. Thus, the online portal is designed to provide spatial and temporal visualization of the indicators using maps, time series and pre-compiled reports for species, sites and conservation programmes. In the future, we aim to expand the geographical coverage of the pipeline to other African countries, and develop more indicators specific to the ecological structure and function of wetlands.
Located in Library / RBINS Staff Publications 2023
Article Reference Bistability in the redox chemistry of sediments and oceans
For most of Earth’s history, the ocean’s interior was pervasively anoxic and showed occasional shifts in ocean redox chemistry between iron-buffered and sulfide-buffered states. These redox transitions are most often explained by large changes in external inputs, such as a strongly altered delivery of iron and sulfate to the ocean, or major shifts in marine productivity. Here, we propose that redox shifts can also arise from small perturbations that are amplified by nonlinear positive feedbacks within the internal iron and sulfur cycling of the ocean. Combining observational evidence with biogeochemical modeling, we show that both sedimentary and aquatic systems display intrinsic iron–sulfur bistability, which is tightly linked to the formation of reduced iron–sulfide minerals. The possibility of tipping points in the redox state of sediments and oceans, which allow large and nonreversible geochemical shifts to arise from relatively small changes in organic carbon input, has important implications for the interpretation of the geological rock record and the causes and consequences of major evolutionary transitions in the history of Earth’s biosphere.
Located in Library / No RBINS Staff publications
Article Reference Bistability in the redox chemistry of sediments and oceans
For most of Earth’s history, the ocean’s interior was pervasively anoxic and showed occasional shifts in ocean redox chemistry between iron-buffered and sulfide-buffered states. These redox transitions are most often explained by large changes in external inputs, such as a strongly altered delivery of iron and sulfate to the ocean, or major shifts in marine productivity. Here, we propose that redox shifts can also arise from small perturbations that are amplified by nonlinear positive feedbacks within the internal iron and sulfur cycling of the ocean. Combining observational evidence with biogeochemical modeling, we show that both sedimentary and aquatic systems display intrinsic iron–sulfur bistability, which is tightly linked to the formation of reduced iron–sulfide minerals. The possibility of tipping points in the redox state of sediments and oceans, which allow large and nonreversible geochemical shifts to arise from relatively small changes in organic carbon input, has important implications for the interpretation of the geological rock record and the causes and consequences of major evolutionary transitions in the history of Earth’s biosphere
Located in Library / RBINS Staff Publications 2020
Article Reference Bite injuries of grey seals (Halichoerus grypus) on harbour porpoises (Phocoena phocoena)
Located in Library / RBINS Staff Publications
Article Reference Bizarre fossil beaked whales (Odontoceti, Ziphiidae) fished from the Atlantic Ocean floor off the Iberian Peninsula
Located in Library / RBINS Staff Publications
Article Reference Black adzes in the Early Neolithic of Belgium. Contribution of the Raman microspectrometry and petrography in the characterization and sourcing
Ancient Neolithic (Linear Pottery Culture) adzes originate from settlements and workshops accompany the neolithization of Belgium. They are made from a wide range of extraregional lithic raw materials such as metamorphic green rocks (amphibolite) and black volcanic rocks (‘basalt’) beside more local or regional raw material as flints, light-coloured (sedimentary and lightly metamorphic) quartzites and fine-grained black rocks. Another material source included black lydites (Cambrian nodular phtanite of Céroux-Mousty and Lower Namurian banded phtanites) and dark grey Lower Namurian silicified sandstones called ‘Micaceous sandstones of Horion-Hozémont’. The discovery of the workshop of Noir Fontaine near the city of Liège in the 1970s and 1980s provides exceptional assemblage available for updating analytical studies. This research focuses on the multi-scale characterization, the discrimination and sourcing of the different types of fine-grained black materials composing Ancient Neolithic adzes found in Belgium. Their black colour results from finely dispersed organic matter, but the absence of palynomorphs does not allow a biostratigraphic ascription. Additional petrographical analyses (Optical Petrography - OP, Scanning Electronic Microscopy - SEM), X-ray diffraction (XRD), chemical analyses (Energy Dispersive Spectroscopy - EDS) and measuring the degree of graphitization of the organic matter through Raman microspectrometry have been decisive in identifying the geological and geographical provenances by comparing the acquired results with geological reference samples collected in the field or through reference collections. The distribution of the different black coloured rocks shows that Cambrian lydites are coming from a very restricted area and were preferred to other more local rock sources.
Located in Library / RBINS Staff Publications 2021
Article Reference Body distribution of toxic peptides in larvae of a pergid and an argid sawfly species
Located in Library / RBINS Staff Publications 2020
Article Reference Body length estimation of the European eel Anguilla anguilla on the basis of isolated skeletal elements
Using a large series of dry skeletons of modern European eel Anguilla anguilla (Linnaeus, 1758) from Belgium and the Netherlands, the relationship between fish length and individual bone measurements is investigated. The aim of the study is to provide adequate regression equations between both parameters. This methodology is relevant for both palaeoecological and ecological researches since isolated skeletal elements survive in large numbers on archaeological sites and in the stomach contents, faeces or regurgitations of piscivorous animals. The predictive value for the length estimations is explored for various skeletal elements and the accuracy of the obtained regression formulae is compared to that of the formulae already existing in literature. Particular attention is paid to the use of vertebrae, taking into account that different morphotypes can be distinguished amongst them.
Located in Library / RBINS Staff Publications
Article Reference Body size and dispersal mode as key traits determining metacommunity structure of aquatic organisms
Located in Library / RBINS Staff Publications
Article Reference Body size and dispersal mode as key traits determining metacommunity structure of aquatic organisms
Located in Library / RBINS Staff Publications