-
Species niches, not traits, determine abundance and occupancy patterns: A multi‐site synthesis
-
Aim Locally abundant species are usually widespread, and this pattern has been related to properties of the niches and traits of species. However, such explanations fail to account for the potential of traits to determine species niches and often overlook statistical artefacts. Here, we examine how trait distinctiveness determines the abilities of species to exploit either common habitats (niche position) or a range of habitats (niche breadth) and how niche position and breadth, in turn, affect abundance and occupancy. We also examine how statistical artefacts moderate these relationships. Location Sixteen sites in the Neotropics. Time period 1993–2014. Major taxa studied Aquatic invertebrates from tank bromeliads. Methods We measured the environmental niche position and breadth of each species and calculated its trait distinctiveness as the average trait difference from all other species at each site. Then, we used a combination of structural equation models and a meta-analytical approach to test trait–niche relationships and a null model to control for statistical artefacts. Results The trait distinctiveness of each species was unrelated to its niche properties, abundance and occupancy. In contrast, niche position was the main predictor of abundance and occupancy; species that used the most common environmental conditions found across bromeliads were locally abundant and widespread. Contributions of niche breadth to such patterns were attributable to statistical artefacts, indicating that effects of niche breadth might have been overestimated in previous studies. Main conclusions Our study reveals the generality of niche position in explaining one of the most common ecological patterns. The robustness of this result is underscored by the geographical extent of our study and our control of statistical artefacts. We call for a similar examination across other systems, which is an essential task to understand the drivers of commonness across the tree of life.
Located in
Library
/
RBINS Staff Publications 2021
-
Facilitating population genomics of non-model organisms through optimized experimental design for reduced representation sequencing
-
Background Genome-wide data are invaluable to characterize differentiation and adaptation of natural populations. Reduced representation sequencing (RRS) subsamples a genome repeatedly across many individuals. However, RRS requires careful optimization and fine-tuning to deliver high marker density while being cost-efficient. The number of genomic fragments created through restriction enzyme digestion and the sequencing library setup must match to achieve sufficient sequencing coverage per locus. Here, we present a workflow based on published information and computational and experimental procedures to investigate and streamline the applicability of RRS. Results In an iterative process genome size estimates, restriction enzymes and size selection windows were tested and scaled in six classes of Antarctic animals (Ostracoda, Malacostraca, Bivalvia, Asteroidea, Actinopterygii, Aves). Achieving high marker density would be expensive in amphipods, the malacostracan target taxon, due to the large genome size. We propose alternative approaches such as mitogenome or target capture sequencing for this group. Pilot libraries were sequenced for all other target taxa. Ostracods, bivalves, sea stars, and fish showed overall good coverage and marker numbers for downstream population genomic analyses. In contrast, the bird test library produced low coverage and few polymorphic loci, likely due to degraded DNA. Conclusions Prior testing and optimization are important to identify which groups are amenable for RRS and where alternative methods may currently offer better cost-benefit ratios. The steps outlined here are easy to follow for other non-model taxa with little genomic resources, thus stimulating efficient resource use for the many pressing research questions in molecular ecology.
Located in
Library
/
RBINS Staff Publications 2021
-
Species' traits and taxonomic distance can predict the hatching phenology of ostracod (Crustacea) resting eggs from tropical floodplain lakes
-
Freshwater ostracods are commonly found in temporary ponds and lakes, surviving drought periods by producing resting eggs. We investigated the hatching phenology of ostracod resting eggs from the sediments of temporary floodplain lakes, considering both the taxonomic distance between species and their functional traits, such as carapace size (length and height) and shape, valve ornamentation, and reproductive mode. In addition, we tested the hypotheses: (1) that the hatching time is more similar between congeneric ostracod species than between noncongeneric species; (2) that differences in hatching time between congeneric species are often related to differences in functional traits; (3) that both species composition and functional traits composition of hatchlings change over the incubation time, but with a reduction in the variability over time. The experiment was conducted for 98 days in the laboratory, and the microcosms were monitored weekly. The first hatching of an ostracod was recorded during the second week of incubation after hydration of the sediments. A total of 12 ostracod species hatched, belonging to the families Cyprididae and Candonidae. The above three hypotheses were corroborated. The time between inundation and first hatching was mostly similar for congeneric species in the genus Chlamydotheca, but was different between some species of Strandesia, which might be owing to differences in functional traits. The species composition and functional trait composition of the hatched ostracods were significantly different over the 14 weeks of incubation due to the different hatching phenology of different species. Furthermore, our results show that both taxonomic distance and functional traits can influence the hatching time of ostracod resting eggs from temporary floodplain lakes. Thus, future studies addressing the hatching phenology of ostracod resting eggs (and resting stages from other invertebrates) should also emphasize the use of functional traits.
Located in
Library
/
RBINS Staff Publications 2021
-
A new tribe, two new genera and three new species of Cypridopsinae (Crustacea, Ostracoda, Cyprididae) from Brazil.
-
We describe one new tribe, two new genera and three new species of the subfamily Cypridopsinae Kaufmann, 1900 from Brazilian floodplains. Brasilodopsis gen. nov. belongs in the nominal tribe Cypridopsini, and both new species in this new genus were found in both sexual and asexual populations. Brasilodopsis baiabonita gen. et sp. nov. has a wide distribution and was found in three of the four major Brazilian floodplains. Brasilodopsis amazonica gen. et sp. nov. was recorded only from the Amazon floodplain. Brasilodopsis baiabonita gen. et sp. nov. has a subtriangular shape in lateral view, whereas Brasilodopsis amazonica gen. et sp. nov. is more elongated and has more rounded dorsal margins in both valves, as well as more pronounced external valve ornamentation, consisting of rimmed pores in shallow pits. Paranadopsis reducta gen. et sp. nov. was found in asexual populations in the Upper Paraná River floodplain only and differs from other Cypridopsinae in the more elongated carapace, an A1 with strongly reduced chaetotaxy (hence the specific name) and the total absence of caudal rami in females. Because of these strong reductions in valve and limb morphology, Paranadopsini trib. nov. is created within the Cypridopsinae for this intriguing new genus and species.
Located in
Library
/
RBINS Staff Publications 2021
-
The representativeness of protected areas for Amazonian fish diversity under climate change.
-
Located in
Library
/
RBINS Staff Publications 2021
-
Eight new species of marine dolichopodid flies of Thinophilus Wahlberg, 1844 (Diptera, Dolichopodidae) from peninsular Thailand
-
Located in
Library
/
RBINS Staff Publications 2017
-
A secondary mandibular condylar articulation and collateral effects on a Late Neolithic mandible from Bois Madame rockshelter in Arbre, Belgium
-
A Neolithic Belgian mandible from Bois Madame rockshelter in Arbre presents an asymmetrical morphology resulting from a secondary, or false, articulation of the right mandibular condyle. The pathological articulation produced enlarged masseter, medial pterygoid and mylohyoid musculature on the right side as well as a flattening of the right incisal alveolus curvature. The secondary condylar articulation did not lead to pronounced asymmetry of attrition on the antimeres of the dental arcade. This is the most complete mandible from this Late Neolithic collective burial dating to the beginning of the Bronze Age circa 4000 years BP. It is possible that a fall or blow to the mental symphysis during early adolescence could have resulted in the partial intrusion of the mandibular condyle into the articulation disc of the temporomandibular joint capsule. When the affected condyle healed, a secondary, but serviceable articulation developed, producing unique stresses on the involved muscular tissue and ultimately resulted in an asymmetry of mandibular form.
Located in
Library
/
RBINS Staff Publications 2017
-
Pisachini planthoppers of Vietnam: new records of Pisacha and a new Goniopsarites species from Central Vietnam (Hemiptera, Fulgoromorpha, Nogodinidae)
-
Located in
Library
/
RBINS Staff Publications 2024
-
Palaeogenomics of Upper Palaeolithic to Neolithic European hunter-gatherers
-
Modern humans have populated Europe for more than 45,000 years1,2. Our knowledge of the genetic relatedness and structure of ancient hunter-gatherers is however limited, owing to the scarceness and poor molecular preservation of human remains from that period3. Here we analyse 356 ancient hunter-gatherer genomes, including new genomic data for 116 individuals from 14 countries in western and central Eurasia, spanning between 35,000 and 5,000 years ago. We identify a genetic ancestry profile in individuals associated with Upper Palaeolithic Gravettian assemblages from western Europe that is distinct from contemporaneous groups related to this archaeological culture in central and southern Europe4, but resembles that of preceding individuals associated with the Aurignacian culture. This ancestry profile survived during the Last Glacial Maximum (25,000 to 19,000 years ago) in human populations from southwestern Europe associated with the Solutrean culture, and with the following Magdalenian culture that re-expanded northeastward after the Last Glacial Maximum. Conversely, we reveal a genetic turnover in southern Europe suggesting a local replacement of human groups around the time of the Last Glacial Maximum, accompanied by a north-to-south dispersal of populations associated with the Epigravettian culture. From at least 14,000 years ago, an ancestry related to this culture spread from the south across the rest of Europe, largely replacing the Magdalenian-associated gene pool. After a period of limited admixture that spanned the beginning of the Mesolithic, we find genetic interactions between western and eastern European hunter-gatherers, who were also characterized by marked differences in phenotypically relevant variants.
Located in
Library
/
RBINS Staff Publications 2023
-
A new odontocete (toothed cetacean) from the Early Miocene of Peru expands the morphological disparity of extinct heterodont dolphins
-
Located in
Library
/
RBINS Staff Publications 2017
